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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LC090757.1 nt Binary vector pMpGE011 DNA, complet... 18684 bp Binary vector pMpGE011 QL-ELE-00-012 82 bp View
LC090757.1 nt Binary vector pMpGE011 DNA, complet... 18684 bp Binary vector pMpGE011 QL-ELE-00-012 82 bp View
LC094319.1 nt Gateway recycling vector pRED56-MD8... 11276 bp Gateway recycling vector pRED56-MD8-Pnos-Fluc-35SRluc QL-ELE-00-012 82 bp View
LC094320.1 nt Gateway recycling vector pRED56-MD8... 11654 bp Gateway recycling vector pRED56-MD8-Pnos-Flucin-35SRlucin QL-ELE-00-012 82 bp View
LC094339.1 nt Gateway recycling vector R4pRED56-M... 10989 bp Gateway recycling vector R4pRED56-MD8-Fluc-35SRluc QL-ELE-00-012 82 bp View
LC094340.1 nt Gateway recycling vector R4pRED56-M... 11367 bp Gateway recycling vector R4pRED56-MD8-Flucin-35SRlucin QL-ELE-00-012 82 bp View
LC101762.1 nt Moss transformation vector p3xHA NP... 5405 bp Moss transformation vector p3xHA NPTII QL-ELE-00-012 82 bp View
LC101763.1 nt Moss transformation vector p3xMyc N... 5426 bp Moss transformation vector p3xMyc NPTII QL-ELE-00-012 82 bp View
LC101764.1 nt Moss transformation vector p3xMyc a... 5631 bp Moss transformation vector p3xMyc aphIV QL-ELE-00-012 82 bp View
LC102727.1 nt Moss transformation vector pPGX6-km... 12324 bp Moss transformation vector pPGX6-km QL-ELE-00-012 82 bp View
LC122270.1 nt Gateway vector pSSARL-GwBP DNA, com... 9320 bp Gateway vector pSSARL-GwBP QL-ELE-00-012 82 bp View
LC122351.1 nt Moss transformation vector pT1GX6 D... 12607 bp Moss transformation vector pT1GX6 QL-ELE-00-012 82 bp View
LC122496.1 nt Binary vector pDual35SGw1301 DNA, c... 16781 bp Binary vector pDual35SGw1301 QL-ELE-00-012 82 bp View
LC122496.1 nt Binary vector pDual35SGw1301 DNA, c... 16781 bp Binary vector pDual35SGw1301 QL-ELE-00-012 82 bp View
LC122496.1 nt Binary vector pDual35SGw1301 DNA, c... 16781 bp Binary vector pDual35SGw1301 QL-ELE-00-012 82 bp View
LC122496.1 nt Binary vector pDual35SGw1301 DNA, c... 16781 bp Binary vector pDual35SGw1301 QL-ELE-00-012 82 bp View
LC122496.1 nt Binary vector pDual35SGw1301 DNA, c... 16781 bp Binary vector pDual35SGw1301 QL-ELE-00-012 82 bp View
LC126301.1 nt Moss transformation vector pT1OG DN... 10690 bp Moss transformation vector pT1OG QL-ELE-00-012 82 bp View
LC140745.1 nt Binary vector pEgP526-2A-GFBSD2 DNA... 14138 bp Binary vector pEgP526-2A-GFBSD2 QL-ELE-00-012 82 bp View
LC140745.1 nt Binary vector pEgP526-2A-GFBSD2 DNA... 14138 bp Binary vector pEgP526-2A-GFBSD2 QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.