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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LC057583.1 nt Binary vector pMpGWB430 DNA, comple... 13342 bp Binary vector pMpGWB430 QL-ELE-00-012 82 bp View
LC057583.1 nt Binary vector pMpGWB430 DNA, comple... 13342 bp Binary vector pMpGWB430 QL-ELE-00-012 82 bp View
LC057583.1 nt Binary vector pMpGWB430 DNA, comple... 13342 bp Binary vector pMpGWB430 QL-ELE-00-012 82 bp View
LC057584.1 nt Binary vector pMpGWB431 DNA, comple... 12745 bp Binary vector pMpGWB431 QL-ELE-00-012 82 bp View
LC057584.1 nt Binary vector pMpGWB431 DNA, comple... 12745 bp Binary vector pMpGWB431 QL-ELE-00-012 82 bp View
LC057585.1 nt Binary vector pMpGWB432 DNA, comple... 12205 bp Binary vector pMpGWB432 QL-ELE-00-012 82 bp View
LC057585.1 nt Binary vector pMpGWB432 DNA, comple... 12205 bp Binary vector pMpGWB432 QL-ELE-00-012 82 bp View
LC057586.1 nt Binary vector pMpGWB433 DNA, comple... 12925 bp Binary vector pMpGWB433 QL-ELE-00-012 82 bp View
LC057586.1 nt Binary vector pMpGWB433 DNA, comple... 12925 bp Binary vector pMpGWB433 QL-ELE-00-012 82 bp View
LC057587.1 nt Binary vector pMpGWB434 DNA, comple... 13075 bp Binary vector pMpGWB434 QL-ELE-00-012 82 bp View
LC057587.1 nt Binary vector pMpGWB434 DNA, comple... 13075 bp Binary vector pMpGWB434 QL-ELE-00-012 82 bp View
LC057588.1 nt Binary vector pMpGWB435 DNA, comple... 12528 bp Binary vector pMpGWB435 QL-ELE-00-012 82 bp View
LC057588.1 nt Binary vector pMpGWB435 DNA, comple... 12528 bp Binary vector pMpGWB435 QL-ELE-00-012 82 bp View
LC057588.1 nt Binary vector pMpGWB435 DNA, comple... 12528 bp Binary vector pMpGWB435 QL-ELE-00-012 82 bp View
LC057589.1 nt Binary vector pMpGWB436 DNA, comple... 13422 bp Binary vector pMpGWB436 QL-ELE-00-012 82 bp View
LC057589.1 nt Binary vector pMpGWB436 DNA, comple... 13422 bp Binary vector pMpGWB436 QL-ELE-00-012 82 bp View
LC073698.1 nt Carica papaya DNA, contig: Contig_1... 719 bp Carica papaya QL-ELE-00-012 82 bp View
LC073703.1 nt Carica papaya DNA, contig: p981&p98... 1431 bp Carica papaya QL-ELE-00-012 82 bp View
LC090756.1 nt Binary vector pMpGE010 DNA, complet... 17673 bp Binary vector pMpGE010 QL-ELE-00-012 82 bp View
LC090756.1 nt Binary vector pMpGE010 DNA, complet... 17673 bp Binary vector pMpGE010 QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.