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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY913902.1 nt Ti plasmid binary vector pGZ13.0313... 18323 bp Ti plasmid binary vector pGZ13.0313 QL-ELE-00-012 82 bp View
KY913902.1 nt Ti plasmid binary vector pGZ13.0313... 18323 bp Ti plasmid binary vector pGZ13.0313 QL-ELE-00-012 82 bp View
KY913902.1 nt Ti plasmid binary vector pGZ13.0313... 18323 bp Ti plasmid binary vector pGZ13.0313 QL-ELE-00-012 82 bp View
KY913902.1 nt Ti plasmid binary vector pGZ13.0313... 18323 bp Ti plasmid binary vector pGZ13.0313 QL-ELE-00-012 82 bp View
KY913902.1 nt Ti plasmid binary vector pGZ13.0313... 18323 bp Ti plasmid binary vector pGZ13.0313 QL-ELE-00-012 82 bp View
KY964325.1 nt Synthetic construct beta-lactamase ... 3627 bp synthetic construct QL-ELE-00-012 82 bp View
L09053.1 nt Cauliflower mosaic virus major incl... 3036 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LC030196.1 nt Gateway vector pnVGW3 DNA, complete... 6624 bp Gateway vector pnVGW3 QL-ELE-00-012 82 bp View
LC030197.1 nt Gateway vector pcVGW DNA, complete ... 6081 bp Gateway vector pcVGW QL-ELE-00-012 82 bp View
LC030198.1 nt Gateway vector pGWnV3 DNA, complete... 6640 bp Gateway vector pGWnV3 QL-ELE-00-012 82 bp View
LC030199.1 nt Gateway vector pGWcV DNA, complete ... 6097 bp Gateway vector pGWcV QL-ELE-00-012 82 bp View
LC030200.1 nt Gateway vector pGWnV4 DNA, complete... 6640 bp Gateway vector pGWnV4 QL-ELE-00-012 82 bp View
LC030201.1 nt Gateway vector pGWcV2 DNA, complete... 6097 bp Gateway vector pGWcV2 QL-ELE-00-012 82 bp View
LC030202.1 nt Gateway vector pUGW2C DNA, complete... 6010 bp Gateway vector pUGW2C QL-ELE-00-012 82 bp View
LC041121.1 nt Cloning vector pMpGWB337 DNA, compl... 18762 bp Cloning vector pMpGWB337 QL-ELE-00-012 82 bp View
LC041121.1 nt Cloning vector pMpGWB337 DNA, compl... 18762 bp Cloning vector pMpGWB337 QL-ELE-00-012 82 bp View
LC057442.1 nt Binary vector pMpGWB100 DNA, comple... 9502 bp Binary vector pMpGWB100 QL-ELE-00-012 82 bp View
LC057442.1 nt Binary vector pMpGWB100 DNA, comple... 9502 bp Binary vector pMpGWB100 QL-ELE-00-012 82 bp View
LC057443.1 nt Binary vector pMpGWB101 DNA, comple... 11211 bp Binary vector pMpGWB101 QL-ELE-00-012 82 bp View
LC057443.1 nt Binary vector pMpGWB101 DNA, comple... 11211 bp Binary vector pMpGWB101 QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.