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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY434118.1 nt Gateway vector p2FLGW7, complete se... 7602 bp Gateway vector p2FLGW7 QL-ELE-00-012 82 bp View
KY434119.1 nt Gateway vector p2RLGW7, complete se... 6885 bp Gateway vector p2RLGW7 QL-ELE-00-012 82 bp View
KY439904.1 nt Cloning vector pEff, complete sequence. 14487 bp Cloning vector pEff QL-ELE-00-012 82 bp View
KY439904.1 nt Cloning vector pEff, complete sequence. 14487 bp Cloning vector pEff QL-ELE-00-012 82 bp View
KY464890.1 nt Nicotiana benthamiana transgenic Np... 9484 bp Nicotiana benthamiana QL-ELE-00-012 82 bp View
KY464890.1 emblreltgn Nicotiana benthamiana transgenic Np... 9484 bp Nicotiana benthamiana QL-ELE-00-012 82 bp View
KY489665.1 nt Cloning vector pUbiCas9-Red, comple... 18587 bp Cloning vector pUbiCas9-Red QL-ELE-00-012 82 bp View
KY489666.1 nt Cloning vector pEciCas9-Red, comple... 19241 bp Cloning vector pEciCas9-Red QL-ELE-00-012 82 bp View
KY703614.1 nt Cauliflower mosaic virus strain DSM... 8028 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
KY825138.1 nt Cloning vector pLX-B2-NptII-DsRED, ... 6637 bp Cloning vector pLX-B2-NptII-DsRED QL-ELE-00-012 82 bp View
KY825142.1 nt Cloning vector pLX-B2-TagRFP-T, com... 5485 bp Cloning vector pLX-B2-TagRFP-T QL-ELE-00-012 82 bp View
KY825143.1 nt Cloning vector pLX-B2-XT1-XT2-hCas9... 10749 bp Cloning vector pLX-B2-XT1-XT2-hCas9 QL-ELE-00-012 82 bp View
KY825147.1 nt Cloning vector pLX-B3-TagRFP-T, com... 5547 bp Cloning vector pLX-B3-TagRFP-T QL-ELE-00-012 82 bp View
KY825149.1 nt Cloning vector pLX-B4-TagRFP-T, com... 5363 bp Cloning vector pLX-B4-TagRFP-T QL-ELE-00-012 82 bp View
KY825150.1 nt Cloning vector pLX-PPV, complete se... 14938 bp Cloning vector pLX-PPV QL-ELE-00-012 82 bp View
KY825152.1 nt Cloning vector pLX-R2-TagRFP-T, com... 6185 bp Cloning vector pLX-R2-TagRFP-T QL-ELE-00-012 82 bp View
KY825154.1 nt Cloning vector pLX-R3-TagRFP-T, com... 6247 bp Cloning vector pLX-R3-TagRFP-T QL-ELE-00-012 82 bp View
KY825156.1 nt Cloning vector pLX-R4-TagRFP-T, com... 6063 bp Cloning vector pLX-R4-TagRFP-T QL-ELE-00-012 82 bp View
KY825157.1 nt Cloning vector pLX-UCBSV, complete ... 13212 bp Cloning vector pLX-UCBSV QL-ELE-00-012 82 bp View
KY913902.1 nt Ti plasmid binary vector pGZ13.0313... 18323 bp Ti plasmid binary vector pGZ13.0313 QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.