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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY420079.1 nt Plant TransGene Stacking II system ... 9116 bp Plant TransGene Stacking II system binary acceptor vector pYL1300H QL-ELE-00-012 82 bp View
KY420079.1 nt Plant TransGene Stacking II system ... 9116 bp Plant TransGene Stacking II system binary acceptor vector pYL1300H QL-ELE-00-012 82 bp View
KY420081.1 nt Plant TransGene Stacking II system ... 17896 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380H QL-ELE-00-012 82 bp View
KY420081.1 nt Plant TransGene Stacking II system ... 17896 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380H QL-ELE-00-012 82 bp View
KY420082.1 nt Plant TransGene Stacking II system ... 17680 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380N QL-ELE-00-012 82 bp View
KY420082.1 nt Plant TransGene Stacking II system ... 17680 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380N QL-ELE-00-012 82 bp View
KY420083.1 nt Plant TransGene Stacking II system ... 17366 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380B QL-ELE-00-012 82 bp View
KY420083.1 nt Plant TransGene Stacking II system ... 17366 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380B QL-ELE-00-012 82 bp View
KY420085.1 nt Plant TransGene Stacking II system ... 7776 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-H QL-ELE-00-012 82 bp View
KY420085.1 nt Plant TransGene Stacking II system ... 7776 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-H QL-ELE-00-012 82 bp View
KY420086.1 nt Plant TransGene Stacking II system ... 7560 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-N QL-ELE-00-012 82 bp View
KY420086.1 nt Plant TransGene Stacking II system ... 7560 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-N QL-ELE-00-012 82 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QL-ELE-00-012 82 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QL-ELE-00-012 82 bp View
KY426961.1 nt Expression vector pC35-STDParAo, co... 11928 bp Expression vector pC35-STDParAo QL-ELE-00-012 82 bp View
KY426961.1 nt Expression vector pC35-STDParAo, co... 11928 bp Expression vector pC35-STDParAo QL-ELE-00-012 82 bp View
KY426961.1 nt Expression vector pC35-STDParAo, co... 11928 bp Expression vector pC35-STDParAo QL-ELE-00-012 82 bp View
KY426962.1 nt Expression vector pC35-STDCinHwt, c... 11823 bp Expression vector pC35-STDCinHwt QL-ELE-00-012 82 bp View
KY426962.1 nt Expression vector pC35-STDCinHwt, c... 11823 bp Expression vector pC35-STDCinHwt QL-ELE-00-012 82 bp View
KY426962.1 nt Expression vector pC35-STDCinHwt, c... 11823 bp Expression vector pC35-STDCinHwt QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.