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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KX758647.1 nt Cloning vector pGrDL_SP, complete s... 7086 bp Cloning vector pGrDL_SP QL-ELE-00-012 82 bp View
KX758648.1 nt Cloning vector pGrDL_SPb, complete ... 7769 bp Cloning vector pGrDL_SPb QL-ELE-00-012 82 bp View
KX817179.1 nt Cloning vector pYB1301, complete se... 13496 bp Cloning vector pYB1301 QL-ELE-00-012 82 bp View
KX817179.1 nt Cloning vector pYB1301, complete se... 13496 bp Cloning vector pYB1301 QL-ELE-00-012 82 bp View
KX817180.1 nt Cloning vector pYB2301, complete se... 13280 bp Cloning vector pYB2301 QL-ELE-00-012 82 bp View
KX817180.1 nt Cloning vector pYB2301, complete se... 13280 bp Cloning vector pYB2301 QL-ELE-00-012 82 bp View
KX817181.1 nt Cloning vector pYB3301, complete se... 14707 bp Cloning vector pYB3301 QL-ELE-00-012 82 bp View
KX817181.1 nt Cloning vector pYB3301, complete se... 14707 bp Cloning vector pYB3301 QL-ELE-00-012 82 bp View
KX826944.1 nt Binary cloning vector pGreenII-35S,... 3255 bp Binary cloning vector pGreenII-35S QL-ELE-00-012 82 bp View
KX880509.1 nt Synthetic construct EPSPS, Cry2Ab, ... 9143 bp synthetic construct QL-ELE-00-012 82 bp View
KX904357.1 nt Cauliflower mosaic virus isolate DA... 8022 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
KY031324.1 nt Cloning vector pGR-PepMV-ON, comple... 11005 bp Cloning vector pGR-PepMV-ON QL-ELE-00-012 82 bp View
KY080691.1 nt Cloning vector pUB-Cas9, complete s... 14121 bp Cloning vector pUB-Cas9 QL-ELE-00-012 82 bp View
KY080691.1 nt Cloning vector pUB-Cas9, complete s... 14121 bp Cloning vector pUB-Cas9 QL-ELE-00-012 82 bp View
KY080692.1 nt Binary vector pUB-Cas9-@BAR, comple... 14835 bp Binary vector pUB-Cas9-@BAR QL-ELE-00-012 82 bp View
KY080692.1 nt Binary vector pUB-Cas9-@BAR, comple... 14835 bp Binary vector pUB-Cas9-@BAR QL-ELE-00-012 82 bp View
KY080693.1 nt Binary vector pUB-Cas9-@GL1, comple... 14834 bp Binary vector pUB-Cas9-@GL1 QL-ELE-00-012 82 bp View
KY080693.1 nt Binary vector pUB-Cas9-@GL1, comple... 14834 bp Binary vector pUB-Cas9-@GL1 QL-ELE-00-012 82 bp View
KY313415.1 nt Cloning vector pAL004(Ubi-nos)DII, ... 12582 bp Cloning vector pAL004(Ubi-nos)DII QL-ELE-00-012 82 bp View
KY313416.1 nt Cloning vector pAL004(Ubi-nos)mDII,... 12582 bp Cloning vector pAL004(Ubi-nos)mDII QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.