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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KU705395.1 nt Cloning vector pNB1, complete sequence. 4813 bp Cloning vector pNB1 QL-ELE-00-012 82 bp View
KU705395.1 nt Cloning vector pNB1, complete sequence. 4813 bp Cloning vector pNB1 QL-ELE-00-012 82 bp View
KX011462.1 nt Cloning vector pRESC5GGPPS, complet... 11150 bp Cloning vector pRESC5GGPPS QL-ELE-00-012 82 bp View
KX011463.1 nt Cloning vector pRESC5AOC, complete ... 11027 bp Cloning vector pRESC5AOC QL-ELE-00-012 82 bp View
KX252716.1 nt Cloning vector CaMV35S-pFLEV, compl... 4138 bp Cloning vector CaMV35S-pFLEV QL-ELE-00-012 82 bp View
KX388151.1 nt Cloning vector pCAMBIA1300DM_OsU6_A... 14640 bp Cloning vector pCAMBIA1300DM_OsU6_AarI_Cas9 QL-ELE-00-012 82 bp View
KX388151.1 nt Cloning vector pCAMBIA1300DM_OsU6_A... 14640 bp Cloning vector pCAMBIA1300DM_OsU6_AarI_Cas9 QL-ELE-00-012 82 bp View
KX388151.1 nt Cloning vector pCAMBIA1300DM_OsU6_A... 14640 bp Cloning vector pCAMBIA1300DM_OsU6_AarI_Cas9 QL-ELE-00-012 82 bp View
KX400856.1 nt Cloning vector pCAMBIA1300-OsU3(Aar... 14605 bp Cloning vector pCAMBIA1300-OsU3(AarI)-Cas9 QL-ELE-00-012 82 bp View
KX400856.1 nt Cloning vector pCAMBIA1300-OsU3(Aar... 14605 bp Cloning vector pCAMBIA1300-OsU3(AarI)-Cas9 QL-ELE-00-012 82 bp View
KX400856.1 nt Cloning vector pCAMBIA1300-OsU3(Aar... 14605 bp Cloning vector pCAMBIA1300-OsU3(AarI)-Cas9 QL-ELE-00-012 82 bp View
KX510273.1 nt Expression vector hbt::LIC-GFP, com... 4262 bp Expression vector hbt::LIC-GFP QL-ELE-00-012 82 bp View
KX510274.1 nt Expression vector hbt::LIC-HA, comp... 3592 bp Expression vector hbt::LIC-HA QL-ELE-00-012 82 bp View
KX510275.1 nt Expression vector hbt::LIC-GFP-GPI-... 4334 bp Expression vector hbt::LIC-GFP-GPI-nos QL-ELE-00-012 82 bp View
KX640115.1 nt Zea mays transgenic cultivar 631 RR... 7584 bp Zea mays QL-ELE-00-012 82 bp View
KX640115.1 nt Zea mays transgenic cultivar 631 RR... 7584 bp Zea mays QL-ELE-00-012 82 bp View
KX640115.1 emblreltgn Zea mays transgenic cultivar 631 RR... 7584 bp Zea mays QL-ELE-00-012 82 bp View
KX640115.1 emblreltgn Zea mays transgenic cultivar 631 RR... 7584 bp Zea mays QL-ELE-00-012 82 bp View
KX648714.1 nt Cloning vector pRESC8AGO8, complete... 11116 bp Cloning vector pRESC8AGO8 QL-ELE-00-012 82 bp View
KX665539.1 nt Binary vector pDIVA, complete sequence. 4311 bp Binary vector pDIVA QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.