European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KR029113.1 nt Plant multiplex genome editing vect... 14743 bp Plant multiplex genome editing vector pYLCRISPR/Cas9P35s-B QL-ELE-00-012 82 bp View
KR029113.1 nt Plant multiplex genome editing vect... 14743 bp Plant multiplex genome editing vector pYLCRISPR/Cas9P35s-B QL-ELE-00-012 82 bp View
KR029113.1 nt Plant multiplex genome editing vect... 14743 bp Plant multiplex genome editing vector pYLCRISPR/Cas9P35s-B QL-ELE-00-012 82 bp View
KR029113.1 nt Plant multiplex genome editing vect... 14743 bp Plant multiplex genome editing vector pYLCRISPR/Cas9P35s-B QL-ELE-00-012 82 bp View
KR297238.1 nt Physcomitrella transformation vecto... 9705 bp Physcomitrella transformation vector pUbi-MCS-GFP-108-35SNPT QL-ELE-00-012 82 bp View
KR493382.1 nt GM reference vector pBJGMM001, part... 2368 bp GM reference vector pBJGMM001 QL-ELE-00-012 82 bp View
KR857698.1 nt BiFC expression vector pUC-mRYNE, c... 4184 bp BiFC expression vector pUC-mRYNE QL-ELE-00-012 82 bp View
KR857699.1 nt BiFC expression vector pUC-mRYNE(R)... 4160 bp BiFC expression vector pUC-mRYNE(R) QL-ELE-00-012 82 bp View
KR857700.1 nt BiFC expression vector pUC-mRYCE, c... 3944 bp BiFC expression vector pUC-mRYCE QL-ELE-00-012 82 bp View
KR857701.1 nt BiFC expression vector pUC-mRYCE(R)... 3917 bp BiFC expression vector pUC-mRYCE(R) QL-ELE-00-012 82 bp View
KR857702.1 nt BiFC expression vector pUC-mVYCE, c... 3965 bp BiFC expression vector pUC-mVYCE QL-ELE-00-012 82 bp View
KR857703.1 nt BiFC expression vector pUC-mVYCE(R)... 3938 bp BiFC expression vector pUC-mVYCE(R) QL-ELE-00-012 82 bp View
KR857704.1 nt BiFC expression vector pUC-VYNE, co... 4235 bp BiFC expression vector pUC-VYNE QL-ELE-00-012 82 bp View
KR857705.1 nt BiFC expression vector pUC-VYNE(R),... 4205 bp BiFC expression vector pUC-VYNE(R) QL-ELE-00-012 82 bp View
KR857706.1 nt BiFC expression vector pUC-triRV, c... 4199 bp BiFC expression vector pUC-triRV QL-ELE-00-012 82 bp View
KR857707.1 nt BiFC expression vector pUC-triVR, c... 4199 bp BiFC expression vector pUC-triVR QL-ELE-00-012 82 bp View
KR857708.1 nt BiFC expression vector hygII-mRYNE,... 13050 bp BiFC expression vector hygII-mRYNE QL-ELE-00-012 82 bp View
KR857709.1 nt BiFC expression vector hygII-mRYNE(... 13026 bp BiFC expression vector hygII-mRYNE(R) QL-ELE-00-012 82 bp View
KR857710.1 nt BiFC expression vector kanII-mRYCE,... 12592 bp BiFC expression vector kanII-mRYCE QL-ELE-00-012 82 bp View
KR857711.1 nt BiFC expression vector kanII-mRYCE(... 12565 bp BiFC expression vector kanII-mRYCE(R) QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.