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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KP100426.1 nt Ti plasmid binary vector pGZ14.1021... 11138 bp Ti plasmid binary vector pGZ14.1021 QL-ELE-00-012 82 bp View
KP100426.1 nt Ti plasmid binary vector pGZ14.1021... 11138 bp Ti plasmid binary vector pGZ14.1021 QL-ELE-00-012 82 bp View
KP244679.1 nt Binary vector pJZ253, complete sequ... 11951 bp Binary vector pJZ253 QL-ELE-00-012 82 bp View
KP244679.1 nt Binary vector pJZ253, complete sequ... 11951 bp Binary vector pJZ253 QL-ELE-00-012 82 bp View
KP244679.1 nt Binary vector pJZ253, complete sequ... 11951 bp Binary vector pJZ253 QL-ELE-00-012 82 bp View
KP244680.1 nt Binary vector pJZ254, complete sequ... 11801 bp Binary vector pJZ254 QL-ELE-00-012 82 bp View
KP244680.1 nt Binary vector pJZ254, complete sequ... 11801 bp Binary vector pJZ254 QL-ELE-00-012 82 bp View
KP244680.1 nt Binary vector pJZ254, complete sequ... 11801 bp Binary vector pJZ254 QL-ELE-00-012 82 bp View
KP244681.1 nt Binary vector pJZ202, complete sequ... 12438 bp Binary vector pJZ202 QL-ELE-00-012 82 bp View
KP244681.1 nt Binary vector pJZ202, complete sequ... 12438 bp Binary vector pJZ202 QL-ELE-00-012 82 bp View
KP244681.1 nt Binary vector pJZ202, complete sequ... 12438 bp Binary vector pJZ202 QL-ELE-00-012 82 bp View
KP795971.1 nt Binary vector pCAMBIA-mCherry, comp... 8602 bp Binary vector pCAMBIA-mCherry QL-ELE-00-012 82 bp View
KP795971.1 nt Binary vector pCAMBIA-mCherry, comp... 8602 bp Binary vector pCAMBIA-mCherry QL-ELE-00-012 82 bp View
KP795972.1 nt Binary vector pCAMBIA-EGFP, complet... 8590 bp Binary vector pCAMBIA-EGFP QL-ELE-00-012 82 bp View
KP795972.1 nt Binary vector pCAMBIA-EGFP, complet... 8590 bp Binary vector pCAMBIA-EGFP QL-ELE-00-012 82 bp View
KP795973.1 nt Binary vector pCAMBIA-BAR, complete... 8428 bp Binary vector pCAMBIA-BAR QL-ELE-00-012 82 bp View
KP795973.1 nt Binary vector pCAMBIA-BAR, complete... 8428 bp Binary vector pCAMBIA-BAR QL-ELE-00-012 82 bp View
KP826769.1 nt Binary vector PC-GW-Kan, complete s... 11797 bp Binary vector PC-GW-Kan QL-ELE-00-012 82 bp View
KP826769.1 nt Binary vector PC-GW-Kan, complete s... 11797 bp Binary vector PC-GW-Kan QL-ELE-00-012 82 bp View
KP826769.1 nt Binary vector PC-GW-Kan, complete s... 11797 bp Binary vector PC-GW-Kan QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.