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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ608141.1 emblreltgn Brassica napus transgenic line OXY2... 840 bp Brassica napus QL-ELE-00-012 82 bp View
KJ608145.1 nt Gossypium hirsutum 35S1 transgenic ... 615 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608145.1 nt Gossypium hirsutum 35S1 transgenic ... 615 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608145.1 emblreltgn Gossypium hirsutum 35S1 transgenic ... 615 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608145.1 emblreltgn Gossypium hirsutum 35S1 transgenic ... 615 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608146.1 emblreltgn Gossypium hirsutum 35S2 transgenic ... 322 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608147.1 nt Zea mays 35S1 transgenic line T25 p... 319 bp Zea mays QL-ELE-00-012 82 bp View
KJ608147.1 emblreltgn Zea mays 35S1 transgenic line T25 p... 319 bp Zea mays QL-ELE-00-012 82 bp View
KJ690768.1 nt Expression vector pCaPVX100, comple... 13707 bp Expression vector pCaPVX100 QL-ELE-00-012 82 bp View
KJ690769.1 nt Expression vector pCaPVX440, comple... 14054 bp Expression vector pCaPVX440 QL-ELE-00-012 82 bp View
KJ690770.1 nt Expression vector pCaPVX760, comple... 13376 bp Expression vector pCaPVX760 QL-ELE-00-012 82 bp View
KJ701603.1 nt Standard reference vector pMCS, com... 12362 bp standard reference vector pMCS QL-ELE-00-012 82 bp View
KJ701603.1 nt Standard reference vector pMCS, com... 12362 bp standard reference vector pMCS QL-ELE-00-012 82 bp View
KJ716236.1 nt Cauliflower mosaic virus isolate Ca... 8030 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
KM062046.1 nt Cloning vector pPLV03_v2, complete ... 5016 bp Cloning vector pPLV03_v2 QL-ELE-00-012 82 bp View
KM062054.1 nt Cloning vector pPLV18_v2, complete ... 5743 bp Cloning vector pPLV18_v2 QL-ELE-00-012 82 bp View
KM062057.1 nt Cloning vector pPLV21_v2, complete ... 5743 bp Cloning vector pPLV21_v2 QL-ELE-00-012 82 bp View
KM985459.1 nt Cloning vector pHQEFF-1, complete s... 4009 bp Cloning vector pHQEFF-1 QL-ELE-00-012 82 bp View
KP100426.1 nt Ti plasmid binary vector pGZ14.1021... 11138 bp Ti plasmid binary vector pGZ14.1021 QL-ELE-00-012 82 bp View
KP100426.1 nt Ti plasmid binary vector pGZ14.1021... 11138 bp Ti plasmid binary vector pGZ14.1021 QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.