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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ608132.1 emblreltgn Oryza sativa transgenic line Kefeng... 787 bp Oryza sativa QL-ELE-00-012 82 bp View
KJ608133.1 nt Oryza sativa transgenic line Keming... 462 bp Oryza sativa QL-ELE-00-012 82 bp View
KJ608133.1 emblreltgn Oryza sativa transgenic line Keming... 462 bp Oryza sativa QL-ELE-00-012 82 bp View
KJ608134.1 nt Gossypium hirsutum transgenic line ... 1385 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608134.1 emblreltgn Gossypium hirsutum transgenic line ... 1385 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608135.1 nt Zea mays transgenic line MON810 pro... 307 bp Zea mays QL-ELE-00-012 82 bp View
KJ608135.1 emblreltgn Zea mays transgenic line MON810 pro... 307 bp Zea mays QL-ELE-00-012 82 bp View
KJ608136.1 emblreltgn Zea mays transgenic line MON863 pro... 322 bp Zea mays QL-ELE-00-012 82 bp View
KJ608137.1 emblreltgn Gossypium hirsutum transgenic line ... 322 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608138.1 nt Gossypium hirsutum transgenic line ... 610 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608138.1 nt Gossypium hirsutum transgenic line ... 610 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608138.1 emblreltgn Gossypium hirsutum transgenic line ... 610 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608138.1 emblreltgn Gossypium hirsutum transgenic line ... 610 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608139.1 nt Gossypium hirsutum transgenic line ... 519 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608139.1 nt Gossypium hirsutum transgenic line ... 519 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608139.1 emblreltgn Gossypium hirsutum transgenic line ... 519 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608139.1 emblreltgn Gossypium hirsutum transgenic line ... 519 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
KJ608140.1 nt Zea mays transgenic line NK603 prom... 551 bp Zea mays QL-ELE-00-012 82 bp View
KJ608140.1 emblreltgn Zea mays transgenic line NK603 prom... 551 bp Zea mays QL-ELE-00-012 82 bp View
KJ608141.1 nt Brassica napus transgenic line OXY2... 840 bp Brassica napus QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.