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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ081788.1 nt Cloning vector pBullet-end-n, compl... 9007 bp Cloning vector pBullet-end-n QL-ELE-00-012 82 bp View
KJ081789.1 nt Cloning vector pBullet-tg-c, comple... 8728 bp Cloning vector pBullet-tg-c QL-ELE-00-012 82 bp View
KJ081789.1 nt Cloning vector pBullet-tg-c, comple... 8728 bp Cloning vector pBullet-tg-c QL-ELE-00-012 82 bp View
KJ081790.1 nt Cloning vector pBullet-end-c, compl... 9035 bp Cloning vector pBullet-end-c QL-ELE-00-012 82 bp View
KJ081790.1 nt Cloning vector pBullet-end-c, compl... 9035 bp Cloning vector pBullet-end-c QL-ELE-00-012 82 bp View
KJ081791.1 nt Cloning vector pBullet-tg-n, comple... 8700 bp Cloning vector pBullet-tg-n QL-ELE-00-012 82 bp View
KJ081791.1 nt Cloning vector pBullet-tg-n, comple... 8700 bp Cloning vector pBullet-tg-n QL-ELE-00-012 82 bp View
KJ081792.1 nt Cloning vector pBullet-cg-c, comple... 8621 bp Cloning vector pBullet-cg-c QL-ELE-00-012 82 bp View
KJ081792.1 nt Cloning vector pBullet-cg-c, comple... 8621 bp Cloning vector pBullet-cg-c QL-ELE-00-012 82 bp View
KJ184338.1 nt Expression vector pHQEff-6, complet... 4079 bp Expression vector pHQEff-6 QL-ELE-00-012 82 bp View
KJ508866.1 nt Binary vector pIPKb027, complete se... 15551 bp Binary vector pIPKb027 QL-ELE-00-012 82 bp View
KJ508866.1 nt Binary vector pIPKb027, complete se... 15551 bp Binary vector pIPKb027 QL-ELE-00-012 82 bp View
KJ608129.1 nt Zea mays 35S2 transgenic line T25 p... 530 bp Zea mays QL-ELE-00-012 82 bp View
KJ608129.1 emblreltgn Zea mays 35S2 transgenic line T25 p... 530 bp Zea mays QL-ELE-00-012 82 bp View
KJ608130.1 emblreltgn Glycine max transgenic line A5547-1... 530 bp Glycine max QL-ELE-00-012 82 bp View
KJ608131.1 nt Glycine max transgenic line GTS 40-... 322 bp Glycine max QL-ELE-00-012 82 bp View
KJ608131.1 emblreltgn Glycine max transgenic line GTS 40-... 322 bp Glycine max QL-ELE-00-012 82 bp View
KJ608132.1 nt Oryza sativa transgenic line Kefeng... 787 bp Oryza sativa QL-ELE-00-012 82 bp View
KJ608132.1 nt Oryza sativa transgenic line Kefeng... 787 bp Oryza sativa QL-ELE-00-012 82 bp View
KJ608132.1 emblreltgn Oryza sativa transgenic line Kefeng... 787 bp Oryza sativa QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.