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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF537343.1 nt Cloning vector pEnEOi9mycThsp, comp... 4715 bp Cloning vector pEnEOi9mycThsp QL-ELE-00-012 82 bp View
KF545095.1 nt Cloning vector pEnEL2LUC, complete ... 5177 bp Cloning vector pEnEL2LUC QL-ELE-00-012 82 bp View
KF545095.1 nt Cloning vector pEnEL2LUC, complete ... 5177 bp Cloning vector pEnEL2LUC QL-ELE-00-012 82 bp View
KF545096.1 nt Cloning vector pEnEOTG-stop, comple... 4686 bp Cloning vector pEnEOTG-stop QL-ELE-00-012 82 bp View
KF545096.1 nt Cloning vector pEnEOTG-stop, comple... 4686 bp Cloning vector pEnEOTG-stop QL-ELE-00-012 82 bp View
KF647530.1 nt Chloroplast transformation vector p... 12759 bp Chloroplast transformation vector pC35-STDBxb1 QL-ELE-00-012 82 bp View
KF647530.1 nt Chloroplast transformation vector p... 12759 bp Chloroplast transformation vector pC35-STDBxb1 QL-ELE-00-012 82 bp View
KF647530.1 nt Chloroplast transformation vector p... 12759 bp Chloroplast transformation vector pC35-STDBxb1 QL-ELE-00-012 82 bp View
KF718980.1 nt Cloning vector pGGA004, complete se... 3550 bp Cloning vector pGGA004 QL-ELE-00-012 82 bp View
KF719008.1 nt Cloning vector pGGF002, complete se... 4314 bp Cloning vector pGGF002 QL-ELE-00-012 82 bp View
KF719010.1 nt Cloning vector pGGF004, complete se... 4869 bp Cloning vector pGGF004 QL-ELE-00-012 82 bp View
KF871320.1 nt Ti plasmid binary vector pGZ12.0501... 17041 bp Ti plasmid binary vector pGZ12.0501 QL-ELE-00-012 82 bp View
KF871320.1 nt Ti plasmid binary vector pGZ12.0501... 17041 bp Ti plasmid binary vector pGZ12.0501 QL-ELE-00-012 82 bp View
KF871320.1 nt Ti plasmid binary vector pGZ12.0501... 17041 bp Ti plasmid binary vector pGZ12.0501 QL-ELE-00-012 82 bp View
KF871320.1 nt Ti plasmid binary vector pGZ12.0501... 17041 bp Ti plasmid binary vector pGZ12.0501 QL-ELE-00-012 82 bp View
KF871320.1 nt Ti plasmid binary vector pGZ12.0501... 17041 bp Ti plasmid binary vector pGZ12.0501 QL-ELE-00-012 82 bp View
KF871320.1 nt Ti plasmid binary vector pGZ12.0501... 17041 bp Ti plasmid binary vector pGZ12.0501 QL-ELE-00-012 82 bp View
KF939593.1 nt Cloning vector pSOL9DEF1, complete ... 9115 bp Cloning vector pSOL9DEF1 QL-ELE-00-012 82 bp View
KF939594.1 nt Cloning vector pSOL9DEF2, complete ... 9112 bp Cloning vector pSOL9DEF2 QL-ELE-00-012 82 bp View
KF963132.1 nt Binary Vector pGZ12.0108, complete ... 17526 bp Binary Vector pGZ12.0108 QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.