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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF206149.1 nt Plant binary expression and subcell... 14175 bp Plant binary expression and subcellualr localization vector pCRG1301 QL-ELE-00-012 82 bp View
KF206150.1 nt Plant binary expression vector pCR3... 10016 bp Plant binary expression vector pCR3300 QL-ELE-00-012 82 bp View
KF206150.1 nt Plant binary expression vector pCR3... 10016 bp Plant binary expression vector pCR3300 QL-ELE-00-012 82 bp View
KF206151.1 nt Plant binary expression and subcell... 10754 bp Plant binary expression and subcellular localization vector pCRG3300 QL-ELE-00-012 82 bp View
KF206151.1 nt Plant binary expression and subcell... 10754 bp Plant binary expression and subcellular localization vector pCRG3300 QL-ELE-00-012 82 bp View
KF206152.1 nt Plant binary expression vector pCR3... 12907 bp Plant binary expression vector pCR3301 QL-ELE-00-012 82 bp View
KF206152.1 nt Plant binary expression vector pCR3... 12907 bp Plant binary expression vector pCR3301 QL-ELE-00-012 82 bp View
KF206152.1 nt Plant binary expression vector pCR3... 12907 bp Plant binary expression vector pCR3301 QL-ELE-00-012 82 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QL-ELE-00-012 82 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QL-ELE-00-012 82 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QL-ELE-00-012 82 bp View
KF240818.1 nt Binary Vector pGCGi, complete sequence. 14214 bp Binary Vector pGCGi QL-ELE-00-012 82 bp View
KF377824.1 nt Cloning vector p1300-amiRNA, comple... 9527 bp Cloning vector p1300-amiRNA QL-ELE-00-012 82 bp View
KF377824.1 nt Cloning vector p1300-amiRNA, comple... 9527 bp Cloning vector p1300-amiRNA QL-ELE-00-012 82 bp View
KF377824.1 nt Cloning vector p1300-amiRNA, comple... 9527 bp Cloning vector p1300-amiRNA QL-ELE-00-012 82 bp View
KF537341.1 nt Cloning vector pEnEOimCherryF3SGThs... 5580 bp Cloning vector pEnEOimCherryF3SGThsp QL-ELE-00-012 82 bp View
KF537341.1 nt Cloning vector pEnEOimCherryF3SGThs... 5580 bp Cloning vector pEnEOimCherryF3SGThsp QL-ELE-00-012 82 bp View
KF537342.1 nt Cloning vector pEnEOmCherryF3SG, co... 4729 bp Cloning vector pEnEOmCherryF3SG QL-ELE-00-012 82 bp View
KF537342.1 nt Cloning vector pEnEOmCherryF3SG, co... 4729 bp Cloning vector pEnEOmCherryF3SG QL-ELE-00-012 82 bp View
KF537343.1 nt Cloning vector pEnEOi9mycThsp, comp... 4715 bp Cloning vector pEnEOi9mycThsp QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.