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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JX971629.1 nt Plant transient expression vector p... 13207 bp Plant transient expression vector pMW391 QL-ELE-00-012 82 bp View
JX971629.1 nt Plant transient expression vector p... 13207 bp Plant transient expression vector pMW391 QL-ELE-00-012 82 bp View
JX992842.1 nt Cloning vector pUA-At, complete seq... 12347 bp Cloning vector pUA-At QL-ELE-00-012 82 bp View
JX992842.1 nt Cloning vector pUA-At, complete seq... 12347 bp Cloning vector pUA-At QL-ELE-00-012 82 bp View
JX992842.1 nt Cloning vector pUA-At, complete seq... 12347 bp Cloning vector pUA-At QL-ELE-00-012 82 bp View
JX992843.1 nt Cloning vector pUA-Os, complete seq... 13415 bp Cloning vector pUA-Os QL-ELE-00-012 82 bp View
JX992843.1 nt Cloning vector pUA-Os, complete seq... 13415 bp Cloning vector pUA-Os QL-ELE-00-012 82 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QL-ELE-00-012 82 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QL-ELE-00-012 82 bp View
KC416202.1 nt Gateway vector pJan25X, complete se... 16859 bp Gateway vector pJan25X QL-ELE-00-012 82 bp View
KC416202.1 nt Gateway vector pJan25X, complete se... 16859 bp Gateway vector pJan25X QL-ELE-00-012 82 bp View
KC478593.1 nt Gateway binary vector pGWB470, comp... 12177 bp Gateway binary vector pGWB470 QL-ELE-00-012 82 bp View
KC478593.1 nt Gateway binary vector pGWB470, comp... 12177 bp Gateway binary vector pGWB470 QL-ELE-00-012 82 bp View
KC478594.1 nt Gateway binary vector pGWB570, comp... 12498 bp Gateway binary vector pGWB570 QL-ELE-00-012 82 bp View
KC478594.1 nt Gateway binary vector pGWB570, comp... 12498 bp Gateway binary vector pGWB570 QL-ELE-00-012 82 bp View
KC478595.1 nt Gateway binary vector pGWB670, comp... 12033 bp Gateway binary vector pGWB670 QL-ELE-00-012 82 bp View
KC478595.1 nt Gateway binary vector pGWB670, comp... 12033 bp Gateway binary vector pGWB670 QL-ELE-00-012 82 bp View
KC478596.1 nt Gateway binary vector pGWB770, comp... 12655 bp Gateway binary vector pGWB770 QL-ELE-00-012 82 bp View
KC478596.1 nt Gateway binary vector pGWB770, comp... 12655 bp Gateway binary vector pGWB770 QL-ELE-00-012 82 bp View
KC631824.1 nt Binary vector pFMIRE6, complete seq... 12044 bp Binary vector pFMIRE6 QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.