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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JX139719.1 nt Oryza sativa transgenic GM cassette... 985 bp Oryza sativa QL-ELE-00-012 82 bp View
JX139720.1 nt Brassica napus transgenic strain T4... 551 bp Brassica napus QL-ELE-00-012 82 bp View
JX139720.1 emblreltgn Brassica napus transgenic strain T4... 551 bp Brassica napus QL-ELE-00-012 82 bp View
JX139722.1 nt Glycine max transgenic strain A2704... 493 bp Glycine max QL-ELE-00-012 82 bp View
JX139722.1 emblreltgn Glycine max transgenic strain A2704... 493 bp Glycine max QL-ELE-00-012 82 bp View
JX139724.1 nt Gossypium hirsutum transgenic strai... 428 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
JX139724.1 emblreltgn Gossypium hirsutum transgenic strai... 428 bp Gossypium hirsutum QL-ELE-00-012 82 bp View
JX185747.1 nt Cloning vector pSOL9LHGRC, complete... 11253 bp Cloning vector pSOL9LHGRC QL-ELE-00-012 82 bp View
JX185748.1 nt Cloning vector pSOL9LHGRP, complete... 11259 bp Cloning vector pSOL9LHGRP QL-ELE-00-012 82 bp View
JX434027.1 nt GM reference vector pTLH10, partial... 3360 bp GM reference vector pTLH10 QL-ELE-00-012 82 bp View
JX434027.1 nt GM reference vector pTLH10, partial... 3360 bp GM reference vector pTLH10 QL-ELE-00-012 82 bp View
JX434028.1 nt GM reference vector pTLE8, partial ... 3664 bp GM reference vector pTLE8 QL-ELE-00-012 82 bp View
JX434028.1 nt GM reference vector pTLE8, partial ... 3664 bp GM reference vector pTLE8 QL-ELE-00-012 82 bp View
JX475903.1 nt IU.GUS homologous recombination rep... 6394 bp IU.GUS homologous recombination reporter construct T-DNA QL-ELE-00-012 82 bp View
JX475904.1 nt DGU.US homologous recombination rep... 5614 bp DGU.US homologous recombination reporter construct T-DNA QL-ELE-00-012 82 bp View
JX475904.1 nt DGU.US homologous recombination rep... 5614 bp DGU.US homologous recombination reporter construct T-DNA QL-ELE-00-012 82 bp View
JX475905.1 nt DU.GUS homologous recombination rep... 6396 bp DU.GUS homologous recombination reporter construct T-DNA QL-ELE-00-012 82 bp View
JX841315.1 nt Binary vector pCamE, complete sequence. 10131 bp Binary vector pCamE QL-ELE-00-012 82 bp View
JX841315.1 nt Binary vector pCamE, complete sequence. 10131 bp Binary vector pCamE QL-ELE-00-012 82 bp View
JX841315.1 nt Binary vector pCamE, complete sequence. 10131 bp Binary vector pCamE QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.