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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JQ407082.1 nt Expression vector pCamTVBMV, comple... 17877 bp Expression vector pCamTVBMV QL-ELE-00-012 82 bp View
JQ436738.1 nt Binary vector pVCPGUS(I)23010, comp... 14317 bp Binary vector pVCPGUS(I)23010 QL-ELE-00-012 82 bp View
JQ436738.1 nt Binary vector pVCPGUS(I)23010, comp... 14317 bp Binary vector pVCPGUS(I)23010 QL-ELE-00-012 82 bp View
JQ436738.1 nt Binary vector pVCPGUS(I)23010, comp... 14317 bp Binary vector pVCPGUS(I)23010 QL-ELE-00-012 82 bp View
JQ436739.1 nt Binary vector pVCPGUS23010, complet... 14109 bp Binary vector pVCPGUS23010 QL-ELE-00-012 82 bp View
JQ436739.1 nt Binary vector pVCPGUS23010, complet... 14109 bp Binary vector pVCPGUS23010 QL-ELE-00-012 82 bp View
JQ436739.1 nt Binary vector pVCPGUS23010, complet... 14109 bp Binary vector pVCPGUS23010 QL-ELE-00-012 82 bp View
JQ655420.1 nt Cloning vector pUAS:uidA, complete ... 10862 bp Cloning vector pUAS:uidA QL-ELE-00-012 82 bp View
JQ655420.1 nt Cloning vector pUAS:uidA, complete ... 10862 bp Cloning vector pUAS:uidA QL-ELE-00-012 82 bp View
JQ693016.1 nt Synthetic construct clone P35SGFP e... 1582 bp synthetic construct QL-ELE-00-012 82 bp View
JQ693016.1 nt Synthetic construct clone P35SGFP e... 1582 bp synthetic construct QL-ELE-00-012 82 bp View
JQ693017.1 nt Synthetic construct clone PtaccD nu... 1854 bp synthetic construct QL-ELE-00-012 82 bp View
JQ693017.1 nt Synthetic construct clone PtaccD nu... 1854 bp synthetic construct QL-ELE-00-012 82 bp View
JQ693018.1 nt Synthetic construct clone pTaccDGFP... 2247 bp synthetic construct QL-ELE-00-012 82 bp View
JQ693018.1 nt Synthetic construct clone pTaccDGFP... 2247 bp synthetic construct QL-ELE-00-012 82 bp View
JQ974028.1 nt Plant transformation vector pAKE1::... 10699 bp Plant transformation vector pAKE1::35S BpMADS4 QL-ELE-00-012 82 bp View
JX025642.1 nt Binary cloning vector pMAA-Red, com... 9713 bp Binary cloning vector pMAA-Red QL-ELE-00-012 82 bp View
JX139718.1 nt Zea mays transgenic strain MON810 G... 856 bp Zea mays QL-ELE-00-012 82 bp View
JX139718.1 emblreltgn Zea mays transgenic strain MON810 G... 856 bp Zea mays QL-ELE-00-012 82 bp View
JX139719.1 emblreltgn Oryza sativa transgenic GM cassette... 985 bp Oryza sativa QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.