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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JF909459.1 nt Cloning vector pPLV06, complete seq... 5827 bp Cloning vector pPLV06 QL-ELE-00-012 82 bp View
JF909461.1 nt Cloning vector pPLV08, complete seq... 5827 bp Cloning vector pPLV08 QL-ELE-00-012 82 bp View
JF909462.1 nt Cloning vector pPLV09, complete seq... 6181 bp Cloning vector pPLV09 QL-ELE-00-012 82 bp View
JF909464.1 nt Cloning vector pPLV11, complete seq... 6537 bp Cloning vector pPLV11 QL-ELE-00-012 82 bp View
JF909465.1 nt Cloning vector pPLV12, complete seq... 6892 bp Cloning vector pPLV12 QL-ELE-00-012 82 bp View
JF909467.1 nt Cloning vector pPLV14, complete seq... 7077 bp Cloning vector pPLV14 QL-ELE-00-012 82 bp View
JF909468.1 nt Cloning vector pPLV15, complete seq... 7432 bp Cloning vector pPLV15 QL-ELE-00-012 82 bp View
JF909470.1 nt Cloning vector pPLV17, complete seq... 5797 bp Cloning vector pPLV17 QL-ELE-00-012 82 bp View
JF909471.1 nt Cloning vector pPLV18, complete seq... 6151 bp Cloning vector pPLV18 QL-ELE-00-012 82 bp View
JF909473.1 nt Cloning vector pPLV20, complete seq... 5797 bp Cloning vector pPLV20 QL-ELE-00-012 82 bp View
JF909474.1 nt Cloning vector pPLV21, complete seq... 6151 bp Cloning vector pPLV21 QL-ELE-00-012 82 bp View
JF909476.1 nt Cloning vector pPLV23, complete seq... 6507 bp Cloning vector pPLV23 QL-ELE-00-012 82 bp View
JF909477.1 nt Cloning vector pPLV24, complete seq... 6862 bp Cloning vector pPLV24 QL-ELE-00-012 82 bp View
JF909479.1 nt Cloning vector pPLV26, complete seq... 6395 bp Cloning vector pPLV26 QL-ELE-00-012 82 bp View
JF909480.1 nt Cloning vector pPLV27, complete seq... 6750 bp Cloning vector pPLV27 QL-ELE-00-012 82 bp View
JF909483.1 nt Cloning vector pPLV30, complete seq... 9152 bp Cloning vector pPLV30 QL-ELE-00-012 82 bp View
JF909484.1 nt Cloning vector pPLV31, complete seq... 9507 bp Cloning vector pPLV31 QL-ELE-00-012 82 bp View
JF909486.1 nt Cloning vector pPLV33, complete seq... 5251 bp Cloning vector pPLV33 QL-ELE-00-012 82 bp View
JF909487.1 nt Cloning vector pPLV34, complete seq... 5606 bp Cloning vector pPLV34 QL-ELE-00-012 82 bp View
JF927991.1 nt Cloning vector pBOB, complete sequence. 8730 bp Cloning vector pBOB QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.