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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JC529654.1 emblrelpat Sequence 100 from Patent EP2730656. 8641 bp synthetic construct QL-ELE-00-012 82 bp View
JC529655.1 emblrelpat Sequence 101 from Patent EP2730656. 11647 bp synthetic construct QL-ELE-00-012 82 bp View
JC529656.1 emblrelpat Sequence 102 from Patent EP2730656. 11611 bp synthetic construct QL-ELE-00-012 82 bp View
JC529657.1 emblrelpat Sequence 103 from Patent EP2730656. 11649 bp synthetic construct QL-ELE-00-012 82 bp View
JC529658.1 emblrelpat Sequence 104 from Patent EP2730656. 5303 bp synthetic construct QL-ELE-00-012 82 bp View
JC529659.1 emblrelpat Sequence 105 from Patent EP2730656. 8358 bp synthetic construct QL-ELE-00-012 82 bp View
JC529661.1 emblrelpat Sequence 107 from Patent EP2730656. 9592 bp synthetic construct QL-ELE-00-012 82 bp View
JC529668.1 emblrelpat Sequence 114 from Patent EP2730656. 10303 bp synthetic construct QL-ELE-00-012 82 bp View
JC529678.1 emblrelpat Sequence 124 from Patent EP2730656. 11615 bp synthetic construct QL-ELE-00-012 82 bp View
JC603610.1 emblrelpat Sequence 34 from Patent WO2014070646. 261 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
JC740234.1 emblrelpat Sequence 4 from Patent EP2760882. 4903 bp synthetic construct QL-ELE-00-012 82 bp View
JC740234.1 emblrelpat Sequence 4 from Patent EP2760882. 4903 bp synthetic construct QL-ELE-00-012 82 bp View
JC740235.1 emblrelpat Sequence 5 from Patent EP2760882. 3447 bp synthetic construct QL-ELE-00-012 82 bp View
JC740235.1 emblrelpat Sequence 5 from Patent EP2760882. 3447 bp synthetic construct QL-ELE-00-012 82 bp View
JC740240.1 emblrelpat Sequence 10 from Patent EP2760882. 2034 bp synthetic construct QL-ELE-00-012 82 bp View
JC740240.1 emblrelpat Sequence 10 from Patent EP2760882. 2034 bp synthetic construct QL-ELE-00-012 82 bp View
JC740243.1 emblrelpat Sequence 13 from Patent EP2760882. 2034 bp synthetic construct QL-ELE-00-012 82 bp View
JC740243.1 emblrelpat Sequence 13 from Patent EP2760882. 2034 bp synthetic construct QL-ELE-00-012 82 bp View
JC740248.1 emblrelpat Sequence 18 from Patent EP2760882. 4897 bp synthetic construct QL-ELE-00-012 82 bp View
JC740248.1 emblrelpat Sequence 18 from Patent EP2760882. 4897 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.