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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JC529585.1 emblrelpat Sequence 31 from Patent EP2730656. 15114 bp synthetic construct QL-ELE-00-012 82 bp View
JC529586.1 emblrelpat Sequence 32 from Patent EP2730656. 13268 bp synthetic construct QL-ELE-00-012 82 bp View
JC529587.1 emblrelpat Sequence 33 from Patent EP2730656. 19604 bp synthetic construct QL-ELE-00-012 82 bp View
JC529588.1 emblrelpat Sequence 34 from Patent EP2730656. 20082 bp synthetic construct QL-ELE-00-012 82 bp View
JC529600.1 emblrelpat Sequence 46 from Patent EP2730656. 5267 bp synthetic construct QL-ELE-00-012 82 bp View
JC529601.1 emblrelpat Sequence 47 from Patent EP2730656. 8643 bp synthetic construct QL-ELE-00-012 82 bp View
JC529602.1 emblrelpat Sequence 48 from Patent EP2730656. 8720 bp synthetic construct QL-ELE-00-012 82 bp View
JC529605.1 emblrelpat Sequence 51 from Patent EP2730656. 10058 bp synthetic construct QL-ELE-00-012 82 bp View
JC529606.1 emblrelpat Sequence 52 from Patent EP2730656. 11611 bp synthetic construct QL-ELE-00-012 82 bp View
JC529610.1 emblrelpat Sequence 56 from Patent EP2730656. 7466 bp synthetic construct QL-ELE-00-012 82 bp View
JC529611.1 emblrelpat Sequence 57 from Patent EP2730656. 7841 bp synthetic construct QL-ELE-00-012 82 bp View
JC529613.1 emblrelpat Sequence 59 from Patent EP2730656. 9223 bp synthetic construct QL-ELE-00-012 82 bp View
JC529614.1 emblrelpat Sequence 60 from Patent EP2730656. 7472 bp synthetic construct QL-ELE-00-012 82 bp View
JC529615.1 emblrelpat Sequence 61 from Patent EP2730656. 7847 bp synthetic construct QL-ELE-00-012 82 bp View
JC529616.1 emblrelpat Sequence 62 from Patent EP2730656. 10866 bp synthetic construct QL-ELE-00-012 82 bp View
JC529617.1 emblrelpat Sequence 63 from Patent EP2730656. 12055 bp synthetic construct QL-ELE-00-012 82 bp View
JC529622.1 emblrelpat Sequence 68 from Patent EP2730656. 8638 bp synthetic construct QL-ELE-00-012 82 bp View
JC529629.1 emblrelpat Sequence 75 from Patent EP2730656. 11693 bp synthetic construct QL-ELE-00-012 82 bp View
JC529652.1 emblrelpat Sequence 98 from Patent EP2730656. 8641 bp synthetic construct QL-ELE-00-012 82 bp View
JC529653.1 emblrelpat Sequence 99 from Patent EP2730656. 8641 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.