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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JC271579.1 emblrelpat Sequence 864 from Patent WO2011133387. 8640 bp synthetic construct QL-ELE-00-012 82 bp View
JC271579.1 emblrelpat Sequence 864 from Patent WO2011133387. 8640 bp synthetic construct QL-ELE-00-012 82 bp View
JC271580.1 emblrelpat Sequence 865 from Patent WO2011133387. 8647 bp synthetic construct QL-ELE-00-012 82 bp View
JC271581.1 emblrelpat Sequence 866 from Patent WO2011133387. 8908 bp synthetic construct QL-ELE-00-012 82 bp View
JC285243.1 emblrelpat Sequence 5 from Patent WO2011084632. 11978 bp synthetic construct QL-ELE-00-012 82 bp View
JC285244.1 emblrelpat Sequence 6 from Patent WO2011084632. 15992 bp synthetic construct QL-ELE-00-012 82 bp View
JC302239.1 emblrelpat Sequence 4685 from Patent EP2440033. 877 bp synthetic construct QL-ELE-00-012 82 bp View
JC312045.1 emblrelpat Sequence 163 from Patent WO2012134921. 1204 bp synthetic construct QL-ELE-00-012 82 bp View
JC312045.1 emblrelpat Sequence 163 from Patent WO2012134921. 1204 bp synthetic construct QL-ELE-00-012 82 bp View
JC312050.1 emblrelpat Sequence 168 from Patent WO2012134921. 675 bp synthetic construct QL-ELE-00-012 82 bp View
JC312050.1 emblrelpat Sequence 168 from Patent WO2012134921. 675 bp synthetic construct QL-ELE-00-012 82 bp View
JC312051.1 emblrelpat Sequence 169 from Patent WO2012134921. 622 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
JC312051.1 emblrelpat Sequence 169 from Patent WO2012134921. 622 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
JC312052.1 emblrelpat Sequence 170 from Patent WO2012134921. 1446 bp synthetic construct QL-ELE-00-012 82 bp View
JC312052.1 emblrelpat Sequence 170 from Patent WO2012134921. 1446 bp synthetic construct QL-ELE-00-012 82 bp View
JC312053.1 emblrelpat Sequence 171 from Patent WO2012134921. 1165 bp synthetic construct QL-ELE-00-012 82 bp View
JC312053.1 emblrelpat Sequence 171 from Patent WO2012134921. 1165 bp synthetic construct QL-ELE-00-012 82 bp View
JC312054.1 emblrelpat Sequence 172 from Patent WO2012134921. 1751 bp synthetic construct QL-ELE-00-012 82 bp View
JC312054.1 emblrelpat Sequence 172 from Patent WO2012134921. 1751 bp synthetic construct QL-ELE-00-012 82 bp View
JC312055.1 emblrelpat Sequence 173 from Patent WO2012134921. 1101 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.