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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JC170511.1 emblrelpat Sequence 5 from Patent WO2013149018. 11978 bp synthetic construct QL-ELE-00-012 82 bp View
JC170512.1 emblrelpat Sequence 6 from Patent WO2013149018. 16752 bp synthetic construct QL-ELE-00-012 82 bp View
JC176027.1 emblrelpat Sequence 4 from Patent WO2013149726. 7351 bp synthetic construct QL-ELE-00-012 82 bp View
JC181850.1 emblrelpat Sequence 6 from Patent WO2012143545. 1119 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
JC182403.1 emblrelpat Sequence 37 from Patent EP2501219. 1666 bp synthetic construct QL-ELE-00-012 82 bp View
JC200966.1 emblrelpat Sequence 32 from Patent EP2504429. 10934 bp synthetic construct QL-ELE-00-012 82 bp View
JC210263.1 emblrelpat Sequence 12 from Patent EP2440035. 293 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
JC231679.1 emblrelpat Sequence 13 from Patent WO2012045334. 4044 bp synthetic construct QL-ELE-00-012 82 bp View
JC231679.1 emblrelpat Sequence 13 from Patent WO2012045334. 4044 bp synthetic construct QL-ELE-00-012 82 bp View
JC231680.1 emblrelpat Sequence 14 from Patent WO2012045334. 8963 bp synthetic construct QL-ELE-00-012 82 bp View
JC231680.1 emblrelpat Sequence 14 from Patent WO2012045334. 8963 bp synthetic construct QL-ELE-00-012 82 bp View
JC231803.1 emblrelpat Sequence 7 from Patent WO2013012775. 10435 bp synthetic construct QL-ELE-00-012 82 bp View
JC231804.1 emblrelpat Sequence 8 from Patent WO2013012775. 12740 bp synthetic construct QL-ELE-00-012 82 bp View
JC231821.1 emblrelpat Sequence 25 from Patent WO2013012775. 12453 bp Zea mays QL-ELE-00-012 82 bp View
JC231822.1 emblrelpat Sequence 26 from Patent WO2013012775. 4307 bp Zea mays QL-ELE-00-012 82 bp View
JC231826.1 emblrelpat Sequence 30 from Patent WO2013012775. 15810 bp synthetic construct QL-ELE-00-012 82 bp View
JC233144.1 emblrelpat Sequence 3 from Patent WO2012037324. 13180 bp synthetic construct QL-ELE-00-012 82 bp View
JC233144.1 emblrelpat Sequence 3 from Patent WO2012037324. 13180 bp synthetic construct QL-ELE-00-012 82 bp View
JC241441.1 emblrelpat Sequence 19 from Patent EP2365087. 877 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
JC241749.1 emblrelpat Sequence 40 from Patent WO2012089342. 835 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.