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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JB243031.1 emblrelpat Sequence 134 from Patent EP2570484. 3505 bp synthetic construct QL-ELE-00-012 82 bp View
JB243031.1 emblrelpat Sequence 134 from Patent EP2570484. 3505 bp synthetic construct QL-ELE-00-012 82 bp View
JB243043.1 emblrelpat Sequence 146 from Patent EP2570484. 3520 bp synthetic construct QL-ELE-00-012 82 bp View
JB243043.1 emblrelpat Sequence 146 from Patent EP2570484. 3520 bp synthetic construct QL-ELE-00-012 82 bp View
JB255993.1 emblrelpat Sequence 11 from Patent EP2503873. 4076 bp synthetic construct QL-ELE-00-012 82 bp View
JB296197.1 emblrelpat Sequence 820 from Patent EP2431473. 2719 bp synthetic construct QL-ELE-00-012 82 bp View
JB296197.1 emblrelpat Sequence 820 from Patent EP2431473. 2719 bp synthetic construct QL-ELE-00-012 82 bp View
JB296198.1 emblrelpat Sequence 821 from Patent EP2431473. 2367 bp synthetic construct QL-ELE-00-012 82 bp View
JB296198.1 emblrelpat Sequence 821 from Patent EP2431473. 2367 bp synthetic construct QL-ELE-00-012 82 bp View
JB308476.1 emblrelpat Sequence 5158 from Patent EP2563112. 781 bp synthetic construct QL-ELE-00-012 82 bp View
JB308477.1 emblrelpat Sequence 5159 from Patent EP2563112. 877 bp synthetic construct QL-ELE-00-012 82 bp View
JB318724.1 emblrelpat Sequence 67 from Patent EP2441843. 7085 bp synthetic construct QL-ELE-00-012 82 bp View
JB318773.1 emblrelpat Sequence 116 from Patent EP2441843. 7916 bp synthetic construct QL-ELE-00-012 82 bp View
JB318774.1 emblrelpat Sequence 117 from Patent EP2441843. 9190 bp synthetic construct QL-ELE-00-012 82 bp View
JB318782.1 emblrelpat Sequence 125 from Patent EP2441843. 7497 bp synthetic construct QL-ELE-00-012 82 bp View
JB318786.1 emblrelpat Sequence 129 from Patent EP2441843. 8503 bp synthetic construct QL-ELE-00-012 82 bp View
JB318797.1 emblrelpat Sequence 140 from Patent EP2441843. 8979 bp synthetic construct QL-ELE-00-012 82 bp View
JB318816.1 emblrelpat Sequence 159 from Patent EP2441843. 7872 bp synthetic construct QL-ELE-00-012 82 bp View
JB318827.1 emblrelpat Sequence 170 from Patent EP2441843. 21767 bp synthetic construct QL-ELE-00-012 82 bp View
JB321542.1 emblrelpat Sequence 820 from Patent EP2439278. 2719 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.