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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 418 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HL496121.1 emblrelpat Sequence 55 from patent US 9222099. 1865 bp unidentified QL-ELE-00-010 196 bp View
HL832169.1 emblrelpat Sequence 27 from patent US 9347069. 1946 bp unidentified QL-ELE-00-010 196 bp View
HL832170.1 emblrelpat Sequence 28 from patent US 9347069. 1695 bp unidentified QL-ELE-00-010 196 bp View
HL856632.1 emblrelpat Sequence 3 from patent US 9364003. 2880 bp unidentified QL-ELE-00-010 196 bp View
HL867376.1 emblrelpat Sequence 28 from patent US 9365863. 11787 bp unidentified QL-ELE-00-010 196 bp View
HL867376.1 emblrelpat Sequence 28 from patent US 9365863. 11787 bp unidentified QL-ELE-00-010 196 bp View
HL867378.1 emblrelpat Sequence 30 from patent US 9365863. 12797 bp unidentified QL-ELE-00-010 196 bp View
HL867378.1 emblrelpat Sequence 30 from patent US 9365863. 12797 bp unidentified QL-ELE-00-010 196 bp View
HL867379.1 emblrelpat Sequence 31 from patent US 9365863. 12218 bp unidentified QL-ELE-00-010 196 bp View
HL867379.1 emblrelpat Sequence 31 from patent US 9365863. 12218 bp unidentified QL-ELE-00-010 196 bp View
HL867380.1 emblrelpat Sequence 32 from patent US 9365863. 12797 bp unidentified QL-ELE-00-010 196 bp View
HL867380.1 emblrelpat Sequence 32 from patent US 9365863. 12797 bp unidentified QL-ELE-00-010 196 bp View
HL867381.1 emblrelpat Sequence 33 from patent US 9365863. 11906 bp unidentified QL-ELE-00-010 196 bp View
HL867381.1 emblrelpat Sequence 33 from patent US 9365863. 11906 bp unidentified QL-ELE-00-010 196 bp View
HL867382.1 emblrelpat Sequence 34 from patent US 9365863. 7158 bp unidentified QL-ELE-00-010 196 bp View
HL991691.1 emblrelpat Sequence 5 from patent US 9428765. 12208 bp unidentified QL-ELE-00-010 196 bp View
HM047294.1 nt Binary vector pBI121-ELEMENTS, comp... 16746 bp Binary vector pBI121-ELEMENTS QL-ELE-00-010 196 bp View
HV202648.1 emblrelpat JP 2001197842-A/1: Glyphosate toler... 564 bp unidentified QL-ELE-00-010 196 bp View
HV226818.1 emblrelpat JP 2003516753-A/27: DNA CONSTRUCTS ... 1946 bp synthetic construct QL-ELE-00-010 196 bp View
HV226819.1 emblrelpat JP 2003516753-A/28: DNA CONSTRUCTS ... 1695 bp synthetic construct QL-ELE-00-010 196 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.