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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 418 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HK119858.1 emblrelpat Sequence 5 from patent US 8816156. 4427 bp unidentified QL-ELE-00-010 196 bp View
HK119859.1 emblrelpat Sequence 6 from patent US 8816156. 6126 bp unidentified QL-ELE-00-010 196 bp View
HK124786.1 emblrelpat Sequence 27 from patent US 8822666. 1946 bp unidentified QL-ELE-00-010 196 bp View
HK124787.1 emblrelpat Sequence 28 from patent US 8822666. 1695 bp unidentified QL-ELE-00-010 196 bp View
HK151029.1 emblrelpat Sequence 38 from patent US 8846892. 644 bp unidentified QL-ELE-00-010 196 bp View
HK151030.1 emblrelpat Sequence 39 from patent US 8846892. 552 bp unidentified QL-ELE-00-010 196 bp View
HK233796.1 emblrelpat Sequence 36 from patent US 8901373. 1052 bp unidentified QL-ELE-00-010 196 bp View
HK253711.1 emblrelpat Sequence 104 from patent US 8907162. 1052 bp unidentified QL-ELE-00-010 196 bp View
HK381105.1 emblrelpat Sequence 2 from patent US 8940962. 1633 bp unidentified QL-ELE-00-010 196 bp View
HK381107.1 emblrelpat Sequence 4 from patent US 8940962. 2132 bp unidentified QL-ELE-00-010 196 bp View
HK381108.1 emblrelpat Sequence 5 from patent US 8940962. 2821 bp unidentified QL-ELE-00-010 196 bp View
HK381109.1 emblrelpat Sequence 6 from patent US 8940962. 1579 bp unidentified QL-ELE-00-010 196 bp View
HK381110.1 emblrelpat Sequence 7 from patent US 8940962. 1517 bp unidentified QL-ELE-00-010 196 bp View
HK381111.1 emblrelpat Sequence 8 from patent US 8940962. 1399 bp unidentified QL-ELE-00-010 196 bp View
HK381122.1 emblrelpat Sequence 19 from patent US 8940962. 537 bp unidentified QL-ELE-00-010 196 bp View
HK481999.1 emblrelpat Sequence 9 from patent US 8969006. 6466 bp unidentified QL-ELE-00-010 196 bp View
HK509876.1 emblrelpat Sequence 27 from patent US 8987434. 1946 bp unidentified QL-ELE-00-010 196 bp View
HK509877.1 emblrelpat Sequence 28 from patent US 8987434. 1695 bp unidentified QL-ELE-00-010 196 bp View
HK658379.1 emblrelpat Sequence 9 from patent US 9017947. 6466 bp unidentified QL-ELE-00-010 196 bp View
HL496121.1 emblrelpat Sequence 55 from patent US 9222099. 1865 bp unidentified QL-ELE-00-010 196 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.