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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 418 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HC500980.1 emblrelpat Sequence 19 from Patent WO2010033922. 537 bp Figwort mosaic virus QL-ELE-00-010 196 bp View
HC510448.1 emblrelpat Sequence 38 from Patent WO2010036946. 644 bp synthetic construct QL-ELE-00-010 196 bp View
HC510449.1 emblrelpat Sequence 39 from Patent WO2010036946. 552 bp Figwort mosaic virus QL-ELE-00-010 196 bp View
HH996441.1 emblrelpat Sequence 1 from Patent EP1799028. 581 bp Figwort mosaic virus QL-ELE-00-010 196 bp View
HH996461.1 emblrelpat Sequence 21 from Patent EP1799028. 520 bp synthetic construct QL-ELE-00-010 196 bp View
HJ186364.1 emblrelpat Sequence 5 from patent US 8344207. 5480 bp unidentified QL-ELE-00-010 196 bp View
HJ186364.1 emblrelpat Sequence 5 from patent US 8344207. 5480 bp unidentified QL-ELE-00-010 196 bp View
HJ493097.1 emblrelpat Sequence 75 from patent US 8558057. 2175 bp unidentified QL-ELE-00-010 196 bp View
HJ493098.1 emblrelpat Sequence 76 from patent US 8558057. 2220 bp unidentified QL-ELE-00-010 196 bp View
HJ493130.1 emblrelpat Sequence 150 from patent US 8558057. 3736 bp unidentified QL-ELE-00-010 196 bp View
HJ505132.1 emblrelpat Sequence 5 from patent US 8581047. 12208 bp unidentified QL-ELE-00-010 196 bp View
HJ800330.1 emblrelpat Sequence 23 from patent US 8673631. 1275 bp unidentified QL-ELE-00-010 196 bp View
HJ800331.1 emblrelpat Sequence 24 from patent US 8673631. 770 bp unidentified QL-ELE-00-010 196 bp View
HJ800332.1 emblrelpat Sequence 25 from patent US 8673631. 1574 bp unidentified QL-ELE-00-010 196 bp View
HJ800333.1 emblrelpat Sequence 26 from patent US 8673631. 1663 bp unidentified QL-ELE-00-010 196 bp View
HJ800334.1 emblrelpat Sequence 27 from patent US 8673631. 1268 bp unidentified QL-ELE-00-010 196 bp View
HJ800335.1 emblrelpat Sequence 28 from patent US 8673631. 1210 bp unidentified QL-ELE-00-010 196 bp View
HJ928457.1 emblrelpat Sequence 5 from patent US 8692080. 7251 bp unidentified QL-ELE-00-010 196 bp View
HJ928458.1 emblrelpat Sequence 6 from patent US 8692080. 13224 bp unidentified QL-ELE-00-010 196 bp View
HJ928459.1 emblrelpat Sequence 7 from patent US 8692080. 6583 bp unidentified QL-ELE-00-010 196 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.