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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 418 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GY668656.1 emblrelpat Sequence 3 from patent US 8071735. 2880 bp unidentified QL-ELE-00-010 196 bp View
GZ195922.1 emblrelpat Sequence 3 from patent US 8129564. 2880 bp unidentified QL-ELE-00-010 196 bp View
GZ248796.1 emblrelpat Sequence 1 from patent US 8158414. 581 bp unidentified QL-ELE-00-010 196 bp View
GZ248816.1 emblrelpat Sequence 21 from patent US 8158414. 520 bp unidentified QL-ELE-00-010 196 bp View
GZ274350.1 emblrelpat Sequence 75 from patent US 8163979. 2175 bp unidentified QL-ELE-00-010 196 bp View
GZ274351.1 emblrelpat Sequence 76 from patent US 8163979. 2220 bp unidentified QL-ELE-00-010 196 bp View
GZ274383.1 emblrelpat Sequence 150 from patent US 8163979. 3736 bp unidentified QL-ELE-00-010 196 bp View
GZ625414.1 emblrelpat Sequence 5 from patent US 8329989. 7251 bp unidentified QL-ELE-00-010 196 bp View
GZ625415.1 emblrelpat Sequence 6 from patent US 8329989. 13224 bp unidentified QL-ELE-00-010 196 bp View
GZ625416.1 emblrelpat Sequence 7 from patent US 8329989. 6583 bp unidentified QL-ELE-00-010 196 bp View
GZ861204.1 emblrelpat Sequence 3 from patent US 8435743. 2880 bp unidentified QL-ELE-00-010 196 bp View
HB427159.1 emblrelpat Sequence 2 from Patent WO2009073844. 423 bp Figwort mosaic virus QL-ELE-00-010 196 bp View
HB427176.1 emblrelpat Sequence 19 from Patent WO2009073844. 1049 bp synthetic construct QL-ELE-00-010 196 bp View
HC051891.1 emblrelpat Sequence 36 from Patent WO2009126896. 1052 bp Figwort mosaic virus QL-ELE-00-010 196 bp View
HC500963.1 emblrelpat Sequence 2 from Patent WO2010033922. 1633 bp synthetic construct QL-ELE-00-010 196 bp View
HC500965.1 emblrelpat Sequence 4 from Patent WO2010033922. 2120 bp synthetic construct QL-ELE-00-010 196 bp View
HC500966.1 emblrelpat Sequence 5 from Patent WO2010033922. 2816 bp synthetic construct QL-ELE-00-010 196 bp View
HC500967.1 emblrelpat Sequence 6 from Patent WO2010033922. 1573 bp synthetic construct QL-ELE-00-010 196 bp View
HC500968.1 emblrelpat Sequence 7 from Patent WO2010033922. 1510 bp synthetic construct QL-ELE-00-010 196 bp View
HC500969.1 emblrelpat Sequence 8 from Patent WO2010033922. 1324 bp synthetic construct QL-ELE-00-010 196 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.