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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 418 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EA442324.1 emblrelpat Sequence 6 from patent US 7335816. 3706 bp unidentified QL-ELE-00-010 196 bp View
EA442331.1 emblrelpat Sequence 13 from patent US 7335816. 664 bp unidentified QL-ELE-00-010 196 bp View
EA442335.1 emblrelpat Sequence 17 from patent US 7335816. 1042 bp unidentified QL-ELE-00-010 196 bp View
EA780206.1 emblrelpat Sequence 3 from patent US 7381861. 2880 bp unidentified QL-ELE-00-010 196 bp View
FB572992.1 emblrelpat Sequence 9 from Patent WO2006130436. 6466 bp synthetic construct QL-ELE-00-010 196 bp View
FB707509.1 emblrelpat Sequence 5 from Patent WO2007027777. 5480 bp synthetic construct QL-ELE-00-010 196 bp View
FB707509.1 emblrelpat Sequence 5 from Patent WO2007027777. 5480 bp synthetic construct QL-ELE-00-010 196 bp View
FV532179.1 emblrelpat CORN PLANT AND SEED CORRESPONDING T... 12208 bp unidentified QL-ELE-00-010 196 bp View
GN090772.1 emblrelpat Sequence 23 from Patent EP2042603. 1630 bp synthetic construct QL-ELE-00-010 196 bp View
GP466946.1 emblrelpat Sequence 23 from patent US 7554012. 1630 bp unidentified QL-ELE-00-010 196 bp View
GV597339.1 emblrelpat Sequence 9 from patent US 7632985. 6466 bp unidentified QL-ELE-00-010 196 bp View
GX253473.1 emblrelpat Sequence 1 from patent US 7713735. 581 bp unidentified QL-ELE-00-010 196 bp View
GX253493.1 emblrelpat Sequence 21 from patent US 7713735. 520 bp unidentified QL-ELE-00-010 196 bp View
GX711741.1 emblrelpat Sequence 75 from patent US 7825297. 2175 bp unidentified QL-ELE-00-010 196 bp View
GX711742.1 emblrelpat Sequence 76 from patent US 7825297. 2220 bp unidentified QL-ELE-00-010 196 bp View
GX711774.1 emblrelpat Sequence 150 from patent US 7825297. 3736 bp unidentified QL-ELE-00-010 196 bp View
GY472633.1 emblrelpat Sequence 5 from patent US 8034997. 5480 bp unidentified QL-ELE-00-010 196 bp View
GY472633.1 emblrelpat Sequence 5 from patent US 8034997. 5480 bp unidentified QL-ELE-00-010 196 bp View
GY509624.1 emblrelpat Sequence 9 from patent US 8053184. 6466 bp unidentified QL-ELE-00-010 196 bp View
GY516729.1 emblrelpat Sequence 5 from patent US 8062840. 12208 bp unidentified QL-ELE-00-010 196 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.