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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 418 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_FB572992 nrnl1 Sequence 9 from Patent WO2006130436... 6466 bp unidentified QL-ELE-00-010 196 bp View
NRN_FB707509 nrnl1 Sequence 5 from Patent WO2007027777... 5480 bp unidentified QL-ELE-00-010 196 bp View
NRN_FB707509 nrnl1 Sequence 5 from Patent WO2007027777... 5480 bp unidentified QL-ELE-00-010 196 bp View
NRN_FV532179 nrnl1 CORN PLANT AND SEED CORRESPONDING T... 12208 bp unidentified QL-ELE-00-010 196 bp View
NRN_GX253473 nrnl1 Sequence 1 from patent US 7713735. ... 581 bp unidentified QL-ELE-00-010 196 bp View
NRN_GX253493 nrnl1 Sequence 21 from patent US 7713735.... 520 bp unidentified QL-ELE-00-010 196 bp View
NRN_GX711741 nrnl1 Sequence 75 from patent US 7825297.... 2175 bp unidentified QL-ELE-00-010 196 bp View
NRN_GX711742 nrnl1 Sequence 76 from patent US 7825297.... 2220 bp unidentified QL-ELE-00-010 196 bp View
NRN_GX711774 nrnl1 Sequence 150 from patent US 7825297... 3736 bp unidentified QL-ELE-00-010 196 bp View
NRN_HB427159 nrnl1 Sequence 2 from Patent WO2009073844. 423 bp unidentified QL-ELE-00-010 196 bp View
NRN_HB427176 nrnl1 Sequence 19 from Patent WO2009073844. 1049 bp unidentified QL-ELE-00-010 196 bp View
NRN_HC051891 nrnl1 Sequence 36 from Patent WO2009126896. 1052 bp unidentified QL-ELE-00-010 196 bp View
NRN_HC500963 nrnl1 Sequence 2 from Patent WO2010033922. 1633 bp unidentified QL-ELE-00-010 196 bp View
NRN_HC500965 nrnl1 Sequence 4 from Patent WO2010033922. 2120 bp unidentified QL-ELE-00-010 196 bp View
NRN_HC500966 nrnl1 Sequence 5 from Patent WO2010033922. 2816 bp unidentified QL-ELE-00-010 196 bp View
NRN_HC500967 nrnl1 Sequence 6 from Patent WO2010033922. 1573 bp unidentified QL-ELE-00-010 196 bp View
NRN_HC500968 nrnl1 Sequence 7 from Patent WO2010033922. 1510 bp unidentified QL-ELE-00-010 196 bp View
NRN_HC500969 nrnl1 Sequence 8 from Patent WO2010033922. 1324 bp unidentified QL-ELE-00-010 196 bp View
NRN_HC500980 nrnl1 Sequence 19 from Patent WO2010033922. 537 bp unidentified QL-ELE-00-010 196 bp View
NRN_HC510448 nrnl1 Sequence 38 from Patent WO2010036946. 644 bp unidentified QL-ELE-00-010 196 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.