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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 3905 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A06498.1 emblrelpat Artificial sequence for nopaline sy... 1800 bp synthetic construct QL-ELE-00-008 94 bp View
A23998.1 emblrelpat pTE4 expression vector 7049 bp synthetic construct QL-ELE-00-008 94 bp View
AB016260.1 nt Agrobacterium tumefaciens plasmid p... 206479 bp Agrobacterium tumefaciens QL-ELE-00-008 94 bp View
AB020028.2 nt Cloning vector pYLTAC7 DNA, complet... 22530 bp Cloning vector pYLTAC7 QL-ELE-00-008 94 bp View
AB086433.1 nt Synthetic construct gene trap vecto... 10856 bp synthetic construct QL-ELE-00-008 94 bp View
AB086434.1 nt Synthetic construct gene trap vecto... 10212 bp synthetic construct QL-ELE-00-008 94 bp View
AB086435.1 nt Synthetic construct gene trap vecto... 9863 bp synthetic construct QL-ELE-00-008 94 bp View
AB086436.1 nt Synthetic construct gene trap vecto... 10320 bp synthetic construct QL-ELE-00-008 94 bp View
AB289764.1 nt Gateway binary vector pGWB1 DNA, co... 16385 bp Gateway binary vector pGWB1 QL-ELE-00-008 94 bp View
AB289765.1 nt Gateway binary vector pGWB2 DNA, co... 17236 bp Gateway binary vector pGWB2 QL-ELE-00-008 94 bp View
AB289766.1 nt Gateway binary vector pGWB3 DNA, co... 18275 bp Gateway binary vector pGWB3 QL-ELE-00-008 94 bp View
AB289767.1 nt Gateway binary vector pGWB4 DNA, co... 17102 bp Gateway binary vector pGWB4 QL-ELE-00-008 94 bp View
AB289768.2 nt Gateway binary vector pGWB5 DNA, co... 17961 bp Gateway binary vector pGWB5 QL-ELE-00-008 94 bp View
AB289769.1 nt Gateway binary vector pGWB6 DNA, co... 17958 bp Gateway binary vector pGWB6 QL-ELE-00-008 94 bp View
AB289770.1 nt Gateway binary vector pGWB7 DNA, co... 16398 bp Gateway binary vector pGWB7 QL-ELE-00-008 94 bp View
AB289771.1 nt Gateway binary vector pGWB8 DNA, co... 17254 bp Gateway binary vector pGWB8 QL-ELE-00-008 94 bp View
AB289772.1 nt Gateway binary vector pGWB9 DNA, co... 17256 bp Gateway binary vector pGWB9 QL-ELE-00-008 94 bp View
AB289773.1 nt Gateway binary vector pGWB10 DNA, c... 16404 bp Gateway binary vector pGWB10 QL-ELE-00-008 94 bp View
AB289774.1 nt Gateway binary vector pGWB11 DNA, c... 17260 bp Gateway binary vector pGWB11 QL-ELE-00-008 94 bp View
AB289775.1 nt Gateway binary vector pGWB12 DNA, c... 17262 bp Gateway binary vector pGWB12 QL-ELE-00-008 94 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.