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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1271 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ225749.1 nt Gene trapping Ds/T-DNA vector pNU39... 19277 bp Gene trapping Ds/T-DNA vector pNU393B2 QL-ELE-00-012 82 bp View
DQ225749.1 nt Gene trapping Ds/T-DNA vector pNU39... 19277 bp Gene trapping Ds/T-DNA vector pNU393B2 QL-ELE-00-014 60 bp View
DQ225749.1 nt Gene trapping Ds/T-DNA vector pNU39... 19277 bp Gene trapping Ds/T-DNA vector pNU393B2 QL-ELE-00-026 60 bp View
DQ225749.1 nt Gene trapping Ds/T-DNA vector pNU39... 19277 bp Gene trapping Ds/T-DNA vector pNU393B2 QT-ELE-00-004 82 bp View
DQ780877.1 nt Reporter vector pBNP1, complete seq... 6985 bp Reporter vector pBNP1 QL-ELE-00-008 94 bp View
DQ780877.1 nt Reporter vector pBNP1, complete seq... 6985 bp Reporter vector pBNP1 QL-ELE-00-012 82 bp View
DQ780877.1 nt Reporter vector pBNP1, complete seq... 6985 bp Reporter vector pBNP1 QL-ELE-00-014 60 bp View
DQ780877.1 nt Reporter vector pBNP1, complete seq... 6985 bp Reporter vector pBNP1 QL-ELE-00-026 60 bp View
DQ780877.1 nt Reporter vector pBNP1, complete seq... 6985 bp Reporter vector pBNP1 QT-ELE-00-004 82 bp View
EU048869.1 nt Cloning vector pGreenII 0229 62-SK,... 1991 bp Cloning vector pGreenII 0229 62-SK QL-ELE-00-008 94 bp View
EU048869.1 nt Cloning vector pGreenII 0229 62-SK,... 1991 bp Cloning vector pGreenII 0229 62-SK QL-ELE-00-012 82 bp View
EU048869.1 nt Cloning vector pGreenII 0229 62-SK,... 1991 bp Cloning vector pGreenII 0229 62-SK QL-ELE-00-014 60 bp View
EU048869.1 nt Cloning vector pGreenII 0229 62-SK,... 1991 bp Cloning vector pGreenII 0229 62-SK QL-ELE-00-026 60 bp View
EU048869.1 nt Cloning vector pGreenII 0229 62-SK,... 1991 bp Cloning vector pGreenII 0229 62-SK QT-ELE-00-004 82 bp View
FB702577.1 emblrelpat Sequence 6 from Patent EP1882742. 11465 bp Arabidopsis thaliana QL-ELE-00-008 94 bp View
FB702577.1 emblrelpat Sequence 6 from Patent EP1882742. 11465 bp Arabidopsis thaliana QL-ELE-00-012 82 bp View
FB702577.1 emblrelpat Sequence 6 from Patent EP1882742. 11465 bp Arabidopsis thaliana QL-ELE-00-014 60 bp View
FB702577.1 emblrelpat Sequence 6 from Patent EP1882742. 11465 bp Arabidopsis thaliana QL-ELE-00-026 60 bp View
FB702577.1 emblrelpat Sequence 6 from Patent EP1882742. 11465 bp Arabidopsis thaliana QT-ELE-00-004 82 bp View
FM177584.1 nt Cloning vector pG002 7795 bp Cloning vector pG002 QL-ELE-00-008 94 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.