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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB524013.1 nt Gateway binary vector R4L1pGWB532 D... 13680 bp Gateway binary vector R4L1pGWB532 QL-ELE-00-006 180 bp View
AB524014.1 nt Gateway binary vector R4L1pGWB533 D... 12963 bp Gateway binary vector R4L1pGWB533 QL-ELE-00-006 180 bp View
AB524014.1 nt Gateway binary vector R4L1pGWB533 D... 12963 bp Gateway binary vector R4L1pGWB533 QL-ELE-00-006 180 bp View
AB524015.1 nt Gateway binary vector R4L1pGWB535 D... 12804 bp Gateway binary vector R4L1pGWB535 QL-ELE-00-006 180 bp View
AB524015.1 nt Gateway binary vector R4L1pGWB535 D... 12804 bp Gateway binary vector R4L1pGWB535 QL-ELE-00-006 180 bp View
AB524016.1 nt Gateway binary vector R4L1pGWB540 D... 11871 bp Gateway binary vector R4L1pGWB540 QL-ELE-00-006 180 bp View
AB524016.1 nt Gateway binary vector R4L1pGWB540 D... 11871 bp Gateway binary vector R4L1pGWB540 QL-ELE-00-006 180 bp View
AB524017.1 nt Gateway binary vector R4L1pGWB543 D... 11871 bp Gateway binary vector R4L1pGWB543 QL-ELE-00-006 180 bp View
AB524017.1 nt Gateway binary vector R4L1pGWB543 D... 11871 bp Gateway binary vector R4L1pGWB543 QL-ELE-00-006 180 bp View
AB524018.1 nt Gateway binary vector R4L1pGWB550 D... 11868 bp Gateway binary vector R4L1pGWB550 QL-ELE-00-006 180 bp View
AB524018.1 nt Gateway binary vector R4L1pGWB550 D... 11868 bp Gateway binary vector R4L1pGWB550 QL-ELE-00-006 180 bp View
AB524019.1 nt Gateway binary vector R4L1pGWB559 D... 11865 bp Gateway binary vector R4L1pGWB559 QL-ELE-00-006 180 bp View
AB524019.1 nt Gateway binary vector R4L1pGWB559 D... 11865 bp Gateway binary vector R4L1pGWB559 QL-ELE-00-006 180 bp View
AB537478.1 nt Moss transformation vector pPIG1b-N... 9817 bp Moss transformation vector pPIG1b-NGGII QL-ELE-00-006 180 bp View
AB538275.2 nt Moss transformation vector pTN83 ui... 4363 bp Moss transformation vector pTN83 QL-ELE-00-006 180 bp View
AB543110.1 nt Gateway binary vector pGWB601 DNA, ... 10700 bp Gateway binary vector pGWB601 QL-ELE-00-006 180 bp View
AB543110.1 nt Gateway binary vector pGWB601 DNA, ... 10700 bp Gateway binary vector pGWB601 QL-ELE-00-006 180 bp View
AB543111.1 nt Gateway binary vector pGWB602 DNA, ... 11541 bp Gateway binary vector pGWB602 QL-ELE-00-006 180 bp View
AB543111.1 nt Gateway binary vector pGWB602 DNA, ... 11541 bp Gateway binary vector pGWB602 QL-ELE-00-006 180 bp View
AB543112.1 nt Gateway binary vector pGWB602omega ... 11534 bp Gateway binary vector pGWB602omega QL-ELE-00-006 180 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.