European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB364184.1 nt Gateway binary vector R4pGWB516 DNA... 11327 bp Gateway binary vector R4pGWB516 QL-ELE-00-006 180 bp View
AB364184.1 nt Gateway binary vector R4pGWB516 DNA... 11327 bp Gateway binary vector R4pGWB516 QL-ELE-00-006 180 bp View
AB364185.1 nt Gateway binary vector R4pGWB519 DNA... 11558 bp Gateway binary vector R4pGWB519 QL-ELE-00-006 180 bp View
AB364185.1 nt Gateway binary vector R4pGWB519 DNA... 11558 bp Gateway binary vector R4pGWB519 QL-ELE-00-006 180 bp View
AB364186.1 nt Gateway binary vector R4pGWB522 DNA... 11834 bp Gateway binary vector R4pGWB522 QL-ELE-00-006 180 bp View
AB364186.1 nt Gateway binary vector R4pGWB522 DNA... 11834 bp Gateway binary vector R4pGWB522 QL-ELE-00-006 180 bp View
AB364187.1 nt Gateway binary vector R4pGWB525 DNA... 11189 bp Gateway binary vector R4pGWB525 QL-ELE-00-006 180 bp View
AB364187.1 nt Gateway binary vector R4pGWB525 DNA... 11189 bp Gateway binary vector R4pGWB525 QL-ELE-00-006 180 bp View
AB364188.1 nt Gateway binary vector R4pGWB528 DNA... 11702 bp Gateway binary vector R4pGWB528 QL-ELE-00-006 180 bp View
AB364188.1 nt Gateway binary vector R4pGWB528 DNA... 11702 bp Gateway binary vector R4pGWB528 QL-ELE-00-006 180 bp View
AB364189.1 nt Gateway binary vector R4pGWB533 DNA... 12968 bp Gateway binary vector R4pGWB533 QL-ELE-00-006 180 bp View
AB364189.1 nt Gateway binary vector R4pGWB533 DNA... 12968 bp Gateway binary vector R4pGWB533 QL-ELE-00-006 180 bp View
AB364190.1 nt Gateway binary vector R4pGWB535 DNA... 12809 bp Gateway binary vector R4pGWB535 QL-ELE-00-006 180 bp View
AB364190.1 nt Gateway binary vector R4pGWB535 DNA... 12809 bp Gateway binary vector R4pGWB535 QL-ELE-00-006 180 bp View
AB364191.1 nt Gateway binary vector R4pGWB540 DNA... 11873 bp Gateway binary vector R4pGWB540 QL-ELE-00-006 180 bp View
AB364191.1 nt Gateway binary vector R4pGWB540 DNA... 11873 bp Gateway binary vector R4pGWB540 QL-ELE-00-006 180 bp View
AB364192.1 nt Gateway binary vector R4pGWB543 DNA... 11873 bp Gateway binary vector R4pGWB543 QL-ELE-00-006 180 bp View
AB364192.1 nt Gateway binary vector R4pGWB543 DNA... 11873 bp Gateway binary vector R4pGWB543 QL-ELE-00-006 180 bp View
AB364193.1 nt Gateway binary vector R4pGWB550 DNA... 11873 bp Gateway binary vector R4pGWB550 QL-ELE-00-006 180 bp View
AB364193.1 nt Gateway binary vector R4pGWB550 DNA... 11873 bp Gateway binary vector R4pGWB550 QL-ELE-00-006 180 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.