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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AR260588.1 emblrelpat Sequence 16 from patent US 6489542. 8349 bp unidentified QL-ELE-00-005 195 bp View
AR262699.1 emblrelpat Sequence 1 from patent US 6323396. 2345 bp unidentified QL-ELE-00-005 195 bp View
AR271018.1 emblrelpat Sequence 13 from patent US 6501009. 4149 bp unidentified QL-ELE-00-005 195 bp View
AR271019.1 emblrelpat Sequence 15 from patent US 6501009. 3754 bp unidentified QL-ELE-00-005 195 bp View
AR271023.1 emblrelpat Sequence 23 from patent US 6501009. 3469 bp unidentified QL-ELE-00-005 195 bp View
AR342198.1 emblrelpat Sequence 1 from patent US 6573438. 532 bp unidentified QL-ELE-00-005 195 bp View
AR342202.1 emblrelpat Sequence 5 from patent US 6573438. 560 bp unidentified QL-ELE-00-005 195 bp View
AR342206.1 emblrelpat Sequence 9 from patent US 6573438. 7378 bp unidentified QL-ELE-00-005 195 bp View
AR342206.1 emblrelpat Sequence 9 from patent US 6573438. 7378 bp unidentified QL-ELE-00-005 195 bp View
AR371484.1 emblrelpat Sequence 1 from patent US 6395485. 3983 bp unidentified QL-ELE-00-005 195 bp View
AR373962.1 emblrelpat Sequence 8 from patent US 6603062. 4186 bp unidentified QL-ELE-00-005 195 bp View
AR430221.1 emblrelpat Sequence 10 from patent US 6646184. 13737 bp unidentified QL-ELE-00-005 195 bp View
AR482070.1 emblrelpat Sequence 8 from patent US 6699984. 10160 bp unidentified QL-ELE-00-005 195 bp View
AR482070.1 emblrelpat Sequence 8 from patent US 6699984. 10160 bp unidentified QL-ELE-00-005 195 bp View
AR482071.1 emblrelpat Sequence 9 from patent US 6699984. 11784 bp unidentified QL-ELE-00-005 195 bp View
AR482071.1 emblrelpat Sequence 9 from patent US 6699984. 11784 bp unidentified QL-ELE-00-005 195 bp View
AR482072.1 emblrelpat Sequence 10 from patent US 6699984. 11991 bp unidentified QL-ELE-00-005 195 bp View
AR482072.1 emblrelpat Sequence 10 from patent US 6699984. 11991 bp unidentified QL-ELE-00-005 195 bp View
AR482081.1 emblrelpat Sequence 19 from patent US 6699984. 9335 bp unidentified QL-ELE-00-005 195 bp View
AR482088.1 emblrelpat Sequence 26 from patent US 6699984. 5897 bp unidentified QL-ELE-00-005 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.