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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AM884383.1 nt Cloning vector pGHGWC 7799 bp Cloning vector pGHGWC QL-ELE-00-005 195 bp View
AM884384.1 nt Cloning vector pGHGWG 7799 bp Cloning vector pGHGWG QL-ELE-00-005 195 bp View
AM884385.1 nt Cloning vector pGHGWY 7799 bp Cloning vector pGHGWY QL-ELE-00-005 195 bp View
AP019390.1 nt Gateway binary vector pB4nVGW3 DNA,... 12317 bp Gateway binary vector pB4nVGW3 QL-ELE-00-005 195 bp View
AP019391.1 nt Gateway binary vector pB4cVGW DNA, ... 11774 bp Gateway binary vector pB4cVGW QL-ELE-00-005 195 bp View
AP019392.1 nt Gateway binary vector pB4GWnV3 DNA,... 12315 bp Gateway binary vector pB4GWnV3 QL-ELE-00-005 195 bp View
AP019393.1 nt Gateway binary vector pB4GWcV DNA, ... 11772 bp Gateway binary vector pB4GWcV QL-ELE-00-005 195 bp View
AR003011.1 emblrelpat Sequence 46 from patent US 5743477. 1030 bp unidentified QL-ELE-00-005 195 bp View
AR007512.1 emblrelpat Sequence 2 from patent US 5750867. 6555 bp unidentified QL-ELE-00-005 195 bp View
AR007513.1 emblrelpat Sequence 3 from patent US 5750867. 5620 bp unidentified QL-ELE-00-005 195 bp View
AR007527.1 emblrelpat Sequence 17 from patent US 5750867. 4808 bp unidentified QL-ELE-00-005 195 bp View
AR014735.1 emblrelpat Sequence 23 from patent US 5773700. 446 bp unidentified QL-ELE-00-005 195 bp View
AR022666.1 emblrelpat Sequence 16 from patent US 5792932. 1863 bp unidentified QL-ELE-00-005 195 bp View
AR029592.1 emblrelpat Sequence 9 from patent US 5859340. 1863 bp unidentified QL-ELE-00-005 195 bp View
AR074365.1 emblrelpat Sequence 1 from patent US 5952546. 15397 bp unidentified QL-ELE-00-005 195 bp View
AR074365.1 emblrelpat Sequence 1 from patent US 5952546. 15397 bp unidentified QL-ELE-00-005 195 bp View
AR074365.1 emblrelpat Sequence 1 from patent US 5952546. 15397 bp unidentified QL-ELE-00-005 195 bp View
AR074387.1 emblrelpat Sequence 22 from patent US 5952547. 7639 bp unidentified QL-ELE-00-005 195 bp View
AR074388.1 emblrelpat Sequence 23 from patent US 5952547. 7566 bp unidentified QL-ELE-00-005 195 bp View
AR084078.1 emblrelpat Sequence 2 from patent US 5977433. 6555 bp unidentified QL-ELE-00-005 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.