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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8188 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AP018642.1 nt Gateway vector R4L1pMpGWB231 DNA, c... 12481 bp Gateway vector R4L1pMpGWB231 QL-ELE-00-004 123 bp View
AP018643.1 nt Gateway vector R4L1pMpGWB232 DNA, c... 13261 bp Gateway vector R4L1pMpGWB232 QL-ELE-00-004 123 bp View
AP018644.1 nt Gateway vector R4L1pMpGWB235 DNA, c... 12385 bp Gateway vector R4L1pMpGWB235 QL-ELE-00-004 123 bp View
AP018645.1 nt Gateway vector R4L1pMpGWB239 DNA, c... 11452 bp Gateway vector R4L1pMpGWB239 QL-ELE-00-004 123 bp View
AP018646.1 nt Gateway vector R4L1pMpGWB294 DNA, c... 11581 bp Gateway vector R4L1pMpGWB294 QL-ELE-00-004 123 bp View
AP018647.1 nt Gateway vector R4L1pMpGWB295 DNA, c... 11479 bp Gateway vector R4L1pMpGWB295 QL-ELE-00-004 123 bp View
AP018648.1 nt Gateway vector R4L1pMpGWB304 DNA, c... 13978 bp Gateway vector R4L1pMpGWB304 QL-ELE-00-004 123 bp View
AP018649.1 nt Gateway vector R4L1pMpGWB307 DNA, c... 12883 bp Gateway vector R4L1pMpGWB307 QL-ELE-00-004 123 bp View
AP018650.1 nt Gateway vector R4L1pMpGWB331 DNA, c... 13915 bp Gateway vector R4L1pMpGWB331 QL-ELE-00-004 123 bp View
AP018651.1 nt Gateway vector R4L1pMpGWB332 DNA, c... 14695 bp Gateway vector R4L1pMpGWB332 QL-ELE-00-004 123 bp View
AP018652.1 nt Gateway vector R4L1pMpGWB335 DNA, c... 13819 bp Gateway vector R4L1pMpGWB335 QL-ELE-00-004 123 bp View
AP018653.1 nt Gateway vector R4L1pMpGWB339 DNA, c... 12886 bp Gateway vector R4L1pMpGWB339 QL-ELE-00-004 123 bp View
AP018654.1 nt Gateway vector R4L1pMpGWB394 DNA, c... 13015 bp Gateway vector R4L1pMpGWB394 QL-ELE-00-004 123 bp View
AP018655.1 nt Gateway vector R4L1pMpGWB395 DNA, c... 12913 bp Gateway vector R4L1pMpGWB395 QL-ELE-00-004 123 bp View
AP018656.1 nt Gateway vector R4L1pMpGWB404 DNA, c... 12810 bp Gateway vector R4L1pMpGWB404 QL-ELE-00-004 123 bp View
AP018657.1 nt Gateway vector R4L1pMpGWB407 DNA, c... 11715 bp Gateway vector R4L1pMpGWB407 QL-ELE-00-004 123 bp View
AP018658.1 nt Gateway vector R4L1pMpGWB431 DNA, c... 12747 bp Gateway vector R4L1pMpGWB431 QL-ELE-00-004 123 bp View
AP018659.1 nt Gateway vector R4L1pMpGWB432 DNA, c... 13527 bp Gateway vector R4L1pMpGWB432 QL-ELE-00-004 123 bp View
AP018660.1 nt Gateway vector R4L1pMpGWB435 DNA, c... 12651 bp Gateway vector R4L1pMpGWB435 QL-ELE-00-004 123 bp View
AP018661.1 nt Gateway vector R4L1pMpGWB439 DNA, c... 11718 bp Gateway vector R4L1pMpGWB439 QL-ELE-00-004 123 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.