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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8188 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AP018622.1 nt Gateway vector R4pMpGWB404 DNA, com... 12815 bp Gateway vector R4pMpGWB404 QL-ELE-00-004 123 bp View
AP018623.1 nt Gateway vector R4pMpGWB407 DNA, com... 11720 bp Gateway vector R4pMpGWB407 QL-ELE-00-004 123 bp View
AP018624.1 nt Gateway vector R4pMpGWB409 DNA, com... 11027 bp Gateway vector R4pMpGWB409 QL-ELE-00-004 123 bp View
AP018625.1 nt Gateway vector R4pMpGWB431 DNA, com... 12752 bp Gateway vector R4pMpGWB431 QL-ELE-00-004 123 bp View
AP018626.1 nt Gateway vector R4pMpGWB439 DNA, com... 11720 bp Gateway vector R4pMpGWB439 QL-ELE-00-004 123 bp View
AP018627.1 nt Gateway vector R4pMpGWB454 DNA, com... 11123 bp Gateway vector R4pMpGWB454 QL-ELE-00-004 123 bp View
AP018628.1 nt Gateway vector R4pMpGWB456 DNA, com... 11681 bp Gateway vector R4pMpGWB456 QL-ELE-00-004 123 bp View
AP018629.1 nt Gateway vector R4pMpGWB457 DNA, com... 11174 bp Gateway vector R4pMpGWB457 QL-ELE-00-004 123 bp View
AP018630.1 nt Gateway vector R4pMpGWB494 DNA, com... 11852 bp Gateway vector R4pMpGWB494 QL-ELE-00-004 123 bp View
AP018631.1 nt Gateway vector R4pMpGWB495 DNA, com... 11750 bp Gateway vector R4pMpGWB495 QL-ELE-00-004 123 bp View
AP018632.1 nt Gateway vector R4L1pMpGWB104 DNA, c... 13026 bp Gateway vector R4L1pMpGWB104 QL-ELE-00-004 122 bp View
AP018633.1 nt Gateway vector R4L1pMpGWB107 DNA, c... 11931 bp Gateway vector R4L1pMpGWB107 QL-ELE-00-004 122 bp View
AP018634.1 nt Gateway vector R4L1pMpGWB131 DNA, c... 12963 bp Gateway vector R4L1pMpGWB131 QL-ELE-00-004 122 bp View
AP018635.1 nt Gateway vector R4L1pMpGWB132 DNA, c... 13743 bp Gateway vector R4L1pMpGWB132 QL-ELE-00-004 122 bp View
AP018636.1 nt Gateway vector R4L1pMpGWB135 DNA, c... 12867 bp Gateway vector R4L1pMpGWB135 QL-ELE-00-004 122 bp View
AP018637.1 nt Gateway vector R4L1pMpGWB139 DNA, c... 11934 bp Gateway vector R4L1pMpGWB139 QL-ELE-00-004 122 bp View
AP018638.1 nt Gateway vector R4L1pMpGWB194 DNA, c... 12063 bp Gateway vector R4L1pMpGWB194 QL-ELE-00-004 122 bp View
AP018639.1 nt Gateway vector R4L1pMpGWB195 DNA, c... 11961 bp Gateway vector R4L1pMpGWB195 QL-ELE-00-004 122 bp View
AP018640.1 nt Gateway vector R4L1pMpGWB204 DNA, c... 12544 bp Gateway vector R4L1pMpGWB204 QL-ELE-00-004 123 bp View
AP018641.1 nt Gateway vector R4L1pMpGWB207 DNA, c... 11449 bp Gateway vector R4L1pMpGWB207 QL-ELE-00-004 123 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.