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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 58553 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB684655.1 nt Cloning vector pSolycp00030 DNA, co... 11783 bp Cloning vector pSolycp00030 QL-ELE-00-003 173 bp View
AB684656.1 nt Cloning vector pSolycp00031 DNA, co... 11961 bp Cloning vector pSolycp00031 QL-ELE-00-003 173 bp View
AB684657.1 nt Cloning vector pSolycp00032 DNA, co... 11832 bp Cloning vector pSolycp00032 QL-ELE-00-003 173 bp View
AB690456.1 nt Hepatitis C virus replicon pSGR-JFH... 8029 bp Hepatitis C virus replicon pSGR-JFH2.1 QL-ELE-00-003 173 bp View
AB690457.1 nt Hepatitis C virus replicon pSGR-JFH... 8029 bp Hepatitis C virus replicon pSGR-JFH2.2 QL-ELE-00-003 173 bp View
AB691597.1 nt Hepatitis C virus replicon pSGR-S31... 7994 bp Hepatitis C virus replicon pSGR-S310/A QL-ELE-00-003 173 bp View
AB691598.1 nt Hepatitis C virus replicon pSGR-S31... 7994 bp Hepatitis C virus replicon pSGR-S310/B QL-ELE-00-003 173 bp View
AB693967.1 nt Ti-curing vector pK18msr24A DNA, co... 12861 bp Ti-curing vector pK18msr24A QL-ELE-00-003 173 bp View
AB694752.1 nt Cloning vector pK18msr DNA, complet... 10621 bp Cloning vector pK18msr QL-ELE-00-003 173 bp View
AB697057.1 nt Moss transformation vector pGUS-NPT... 7114 bp Moss transformation vector pGUS-NPTII-2 QL-ELE-00-003 173 bp View
AB702969.1 nt Escherichia coli plasmid pCss165Kan... 165311 bp Escherichia coli QL-ELE-00-003 173 bp View
AB711111.1 nt Tetracycline-inducible expression v... 5726 bp Tetracycline-inducible expression vector p9xtetO-IE2mini(L)-DEST QL-ELE-00-003 173 bp View
AB711113.1 nt Cloning vector pZErO-2/9xtetO-IE2mi... 6656 bp Cloning vector pZErO-2/9xtetO-IE2mini(L)-hairpin-A3int-Gm(R) QL-ELE-00-003 173 bp View
AB713996.1 nt Donor vector pZErOTM7ZeoGFPattB DNA... 4789 bp Donor vector pZErOTM7ZeoGFPattB QL-ELE-00-003 173 bp View
AB752375.1 nt Gateway binary vector pGWB480omega ... 12333 bp Gateway binary vector pGWB480omega QL-ELE-00-003 173 bp View
AB752377.1 nt Gateway binary vector pGWB80 DNA, c... 17897 bp Gateway binary vector pGWB80 QL-ELE-00-003 173 bp View
AB758445.1 nt Moss transformation vector pTFH22.4... 6567 bp Moss transformation vector pTFH22.4 QL-ELE-00-003 173 bp View
AB773262.1 nt Suicide vector for unmarked mutagen... 6419 bp Suicide vector for unmarked mutagenesis pKFRT/FLP QL-ELE-00-003 173 bp View
AB777648.1 nt Cloning vector pRMR6K-Km DNA, compl... 5017 bp Cloning vector pRMR6K-Km QL-ELE-00-003 173 bp View
AB777651.1 nt Cloning vector pRMTn-Km DNA, comple... 7715 bp Cloning vector pRMTn-Km QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.