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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 539 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JD591209.1 emblrelpat Sequence 30 from Patent EP2820132. 13702 bp synthetic construct QL-ELE-00-024 87 bp View
JD591214.1 emblrelpat Sequence 35 from Patent EP2820132. 13662 bp synthetic construct QL-ELE-00-002 215 bp View
JD591214.1 emblrelpat Sequence 35 from Patent EP2820132. 13662 bp synthetic construct QL-ELE-00-003 173 bp View
JD591214.1 emblrelpat Sequence 35 from Patent EP2820132. 13662 bp synthetic construct QL-ELE-00-024 87 bp View
JD591219.1 emblrelpat Sequence 40 from Patent EP2820132. 13702 bp synthetic construct QL-ELE-00-002 215 bp View
JD591219.1 emblrelpat Sequence 40 from Patent EP2820132. 13702 bp synthetic construct QL-ELE-00-003 173 bp View
JD591219.1 emblrelpat Sequence 40 from Patent EP2820132. 13702 bp synthetic construct QL-ELE-00-024 87 bp View
JF811683.1 nt Binary vector pPIPRA561, complete s... 10636 bp Binary vector pPIPRA561 QL-ELE-00-002 215 bp View
JF811683.1 nt Binary vector pPIPRA561, complete s... 10636 bp Binary vector pPIPRA561 QL-ELE-00-003 173 bp View
JF811683.1 nt Binary vector pPIPRA561, complete s... 10636 bp Binary vector pPIPRA561 QL-ELE-00-024 87 bp View
JN903571.1 nt Binary expression vector D3cpv-C, c... 12828 bp Binary expression vector D3cpv-C QL-ELE-00-002 215 bp View
JN903571.1 nt Binary expression vector D3cpv-C, c... 12828 bp Binary expression vector D3cpv-C QL-ELE-00-003 173 bp View
JN903571.1 nt Binary expression vector D3cpv-C, c... 12828 bp Binary expression vector D3cpv-C QL-ELE-00-024 87 bp View
JN903572.1 nt Binary expression vector NES-YC3.6,... 12872 bp Binary expression vector NES-YC3.6 QL-ELE-00-002 215 bp View
JN903572.1 nt Binary expression vector NES-YC3.6,... 12872 bp Binary expression vector NES-YC3.6 QL-ELE-00-003 173 bp View
JN903572.1 nt Binary expression vector NES-YC3.6,... 12872 bp Binary expression vector NES-YC3.6 QL-ELE-00-024 87 bp View
JN903573.1 nt Binary expression vector NLS-YC3.6,... 12849 bp Binary expression vector NLS-YC3.6 QL-ELE-00-002 215 bp View
JN903573.1 nt Binary expression vector NLS-YC3.6,... 12849 bp Binary expression vector NLS-YC3.6 QL-ELE-00-003 173 bp View
JN903573.1 nt Binary expression vector NLS-YC3.6,... 12849 bp Binary expression vector NLS-YC3.6 QL-ELE-00-024 87 bp View
JN903574.1 nt Binary expression vector PM-YC3.6-L... 13001 bp Binary expression vector PM-YC3.6-LTI6b QL-ELE-00-002 215 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.