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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 3447 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ414111.1 nt Binary vector pGV4223 DNA, region b... 5582 bp Binary vector pGV4223 QL-ELE-00-008 94 bp View
AJ414111.1 nt Binary vector pGV4223 DNA, region b... 5582 bp Binary vector pGV4223 QL-ELE-00-012 82 bp View
AJ414111.1 nt Binary vector pGV4223 DNA, region b... 5582 bp Binary vector pGV4223 QT-ELE-00-004 82 bp View
AP019390.1 nt Gateway binary vector pB4nVGW3 DNA,... 12317 bp Gateway binary vector pB4nVGW3 QL-ELE-00-001 195 bp View
AP019390.1 nt Gateway binary vector pB4nVGW3 DNA,... 12317 bp Gateway binary vector pB4nVGW3 QL-ELE-00-005 195 bp View
AP019390.1 nt Gateway binary vector pB4nVGW3 DNA,... 12317 bp Gateway binary vector pB4nVGW3 QL-ELE-00-008 94 bp View
AP019390.1 nt Gateway binary vector pB4nVGW3 DNA,... 12317 bp Gateway binary vector pB4nVGW3 QL-ELE-00-012 82 bp View
AP019390.1 nt Gateway binary vector pB4nVGW3 DNA,... 12317 bp Gateway binary vector pB4nVGW3 QT-ELE-00-004 82 bp View
AP019391.1 nt Gateway binary vector pB4cVGW DNA, ... 11774 bp Gateway binary vector pB4cVGW QL-ELE-00-001 195 bp View
AP019391.1 nt Gateway binary vector pB4cVGW DNA, ... 11774 bp Gateway binary vector pB4cVGW QL-ELE-00-005 195 bp View
AP019391.1 nt Gateway binary vector pB4cVGW DNA, ... 11774 bp Gateway binary vector pB4cVGW QL-ELE-00-008 94 bp View
AP019391.1 nt Gateway binary vector pB4cVGW DNA, ... 11774 bp Gateway binary vector pB4cVGW QL-ELE-00-012 82 bp View
AP019391.1 nt Gateway binary vector pB4cVGW DNA, ... 11774 bp Gateway binary vector pB4cVGW QT-ELE-00-004 82 bp View
AP019392.1 nt Gateway binary vector pB4GWnV3 DNA,... 12315 bp Gateway binary vector pB4GWnV3 QL-ELE-00-001 195 bp View
AP019392.1 nt Gateway binary vector pB4GWnV3 DNA,... 12315 bp Gateway binary vector pB4GWnV3 QL-ELE-00-005 195 bp View
AP019392.1 nt Gateway binary vector pB4GWnV3 DNA,... 12315 bp Gateway binary vector pB4GWnV3 QL-ELE-00-008 94 bp View
AP019392.1 nt Gateway binary vector pB4GWnV3 DNA,... 12315 bp Gateway binary vector pB4GWnV3 QL-ELE-00-012 82 bp View
AP019392.1 nt Gateway binary vector pB4GWnV3 DNA,... 12315 bp Gateway binary vector pB4GWnV3 QT-ELE-00-004 82 bp View
AP019393.1 nt Gateway binary vector pB4GWcV DNA, ... 11772 bp Gateway binary vector pB4GWcV QL-ELE-00-001 195 bp View
AP019393.1 nt Gateway binary vector pB4GWcV DNA, ... 11772 bp Gateway binary vector pB4GWcV QL-ELE-00-005 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.