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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 3447 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JX475905.1 nt DU.GUS homologous recombination rep... 6396 bp DU.GUS homologous recombination reporter construct T-DNA QT-ELE-00-004 82 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QL-ELE-00-001 195 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QL-ELE-00-005 195 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QL-ELE-00-008 94 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QL-ELE-00-012 82 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QT-ELE-00-004 82 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QL-ELE-00-001 195 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QL-ELE-00-005 195 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QL-ELE-00-008 94 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QL-ELE-00-012 82 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QT-ELE-00-004 82 bp View
KC416202.1 nt Gateway vector pJan25X, complete se... 16859 bp Gateway vector pJan25X QL-ELE-00-001 195 bp View
KC416202.1 nt Gateway vector pJan25X, complete se... 16859 bp Gateway vector pJan25X QL-ELE-00-005 195 bp View
KC416202.1 nt Gateway vector pJan25X, complete se... 16859 bp Gateway vector pJan25X QL-ELE-00-008 94 bp View
KC416202.1 nt Gateway vector pJan25X, complete se... 16859 bp Gateway vector pJan25X QL-ELE-00-012 82 bp View
KC416202.1 nt Gateway vector pJan25X, complete se... 16859 bp Gateway vector pJan25X QL-ELE-00-012 82 bp View
KC416202.1 nt Gateway vector pJan25X, complete se... 16859 bp Gateway vector pJan25X QT-ELE-00-004 82 bp View
KC416202.1 nt Gateway vector pJan25X, complete se... 16859 bp Gateway vector pJan25X QT-ELE-00-004 82 bp View
KF240818.1 nt Binary Vector pGCGi, complete sequence. 14214 bp Binary Vector pGCGi QL-ELE-00-001 195 bp View
KF240818.1 nt Binary Vector pGCGi, complete sequence. 14214 bp Binary Vector pGCGi QL-ELE-00-005 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.