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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 3447 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HM047294.1 nt Binary vector pBI121-ELEMENTS, comp... 16746 bp Binary vector pBI121-ELEMENTS QL-ELE-00-008 94 bp View
HM047294.1 nt Binary vector pBI121-ELEMENTS, comp... 16746 bp Binary vector pBI121-ELEMENTS QL-ELE-00-012 82 bp View
HM047294.1 nt Binary vector pBI121-ELEMENTS, comp... 16746 bp Binary vector pBI121-ELEMENTS QT-ELE-00-004 82 bp View
HQ698851.1 nt Cloning vector pSOL8DCL2, complete ... 10231 bp Cloning vector pSOL8DCL2 QL-ELE-00-001 195 bp View
HQ698851.1 nt Cloning vector pSOL8DCL2, complete ... 10231 bp Cloning vector pSOL8DCL2 QL-ELE-00-005 195 bp View
HQ698851.1 nt Cloning vector pSOL8DCL2, complete ... 10231 bp Cloning vector pSOL8DCL2 QL-ELE-00-008 94 bp View
HQ698851.1 nt Cloning vector pSOL8DCL2, complete ... 10231 bp Cloning vector pSOL8DCL2 QL-ELE-00-012 82 bp View
HQ698851.1 nt Cloning vector pSOL8DCL2, complete ... 10231 bp Cloning vector pSOL8DCL2 QT-ELE-00-004 82 bp View
HQ698852.1 nt Cloning vector pSOL9CAP, complete s... 9182 bp Cloning vector pSOL9CAP QL-ELE-00-001 195 bp View
HQ698852.1 nt Cloning vector pSOL9CAP, complete s... 9182 bp Cloning vector pSOL9CAP QL-ELE-00-005 195 bp View
HQ698852.1 nt Cloning vector pSOL9CAP, complete s... 9182 bp Cloning vector pSOL9CAP QL-ELE-00-008 94 bp View
HQ698852.1 nt Cloning vector pSOL9CAP, complete s... 9182 bp Cloning vector pSOL9CAP QL-ELE-00-012 82 bp View
HQ698852.1 nt Cloning vector pSOL9CAP, complete s... 9182 bp Cloning vector pSOL9CAP QT-ELE-00-004 82 bp View
HQ698853.1 nt Cloning vector pSOL8DC3, complete s... 10836 bp Cloning vector pSOL8DC3 QL-ELE-00-001 195 bp View
HQ698853.1 nt Cloning vector pSOL8DC3, complete s... 10836 bp Cloning vector pSOL8DC3 QL-ELE-00-005 195 bp View
HQ698853.1 nt Cloning vector pSOL8DC3, complete s... 10836 bp Cloning vector pSOL8DC3 QL-ELE-00-008 94 bp View
HQ698853.1 nt Cloning vector pSOL8DC3, complete s... 10836 bp Cloning vector pSOL8DC3 QL-ELE-00-012 82 bp View
HQ698853.1 nt Cloning vector pSOL8DC3, complete s... 10836 bp Cloning vector pSOL8DC3 QT-ELE-00-004 82 bp View
HV532523.1 emblrelpat JP 2011177191-A/5: Improved targete... 5345 bp synthetic construct QL-ELE-00-001 195 bp View
HV532523.1 emblrelpat JP 2011177191-A/5: Improved targete... 5345 bp synthetic construct QL-ELE-00-005 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.