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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13363 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF622218.1 nt Cloning vector pIPKTA30N, complete ... 7192 bp Cloning vector pIPKTA30N QL-ELE-00-001 195 bp View
EF622218.1 nt Cloning vector pIPKTA30N, complete ... 7192 bp Cloning vector pIPKTA30N QL-ELE-00-004 123 bp View
EF622218.1 nt Cloning vector pIPKTA30N, complete ... 7192 bp Cloning vector pIPKTA30N QL-ELE-00-005 195 bp View
EF622218.1 nt Cloning vector pIPKTA30N, complete ... 7192 bp Cloning vector pIPKTA30N QL-ELE-00-017 75 bp View
EF622218.1 nt Cloning vector pIPKTA30N, complete ... 7192 bp Cloning vector pIPKTA30N QT-ELE-00-001 79 bp View
EU049859.1 nt Cloning vector pSAT4.35S.RNAi, comp... 5214 bp Cloning vector pSAT4.35S.RNAi QL-ELE-00-001 195 bp View
EU049859.1 nt Cloning vector pSAT4.35S.RNAi, comp... 5214 bp Cloning vector pSAT4.35S.RNAi QL-ELE-00-004 123 bp View
EU049859.1 nt Cloning vector pSAT4.35S.RNAi, comp... 5214 bp Cloning vector pSAT4.35S.RNAi QL-ELE-00-005 195 bp View
EU049859.1 nt Cloning vector pSAT4.35S.RNAi, comp... 5214 bp Cloning vector pSAT4.35S.RNAi QL-ELE-00-017 75 bp View
EU049859.1 nt Cloning vector pSAT4.35S.RNAi, comp... 5214 bp Cloning vector pSAT4.35S.RNAi QT-ELE-00-001 79 bp View
EU049862.1 nt Cloning vector pSAT6.35S.RNAi, comp... 5238 bp Cloning vector pSAT6.35S.RNAi QL-ELE-00-001 195 bp View
EU049862.1 nt Cloning vector pSAT6.35S.RNAi, comp... 5238 bp Cloning vector pSAT6.35S.RNAi QL-ELE-00-004 123 bp View
EU049862.1 nt Cloning vector pSAT6.35S.RNAi, comp... 5238 bp Cloning vector pSAT6.35S.RNAi QL-ELE-00-005 195 bp View
EU049862.1 nt Cloning vector pSAT6.35S.RNAi, comp... 5238 bp Cloning vector pSAT6.35S.RNAi QL-ELE-00-017 75 bp View
EU049862.1 nt Cloning vector pSAT6.35S.RNAi, comp... 5238 bp Cloning vector pSAT6.35S.RNAi QT-ELE-00-001 79 bp View
EU315007.1 nt Transformation vector pC23C, comple... 11274 bp Transformation vector pC23C QL-ELE-00-001 195 bp View
EU315007.1 nt Transformation vector pC23C, comple... 11274 bp Transformation vector pC23C QL-ELE-00-004 122 bp View
EU315007.1 nt Transformation vector pC23C, comple... 11274 bp Transformation vector pC23C QL-ELE-00-005 195 bp View
EU315007.1 nt Transformation vector pC23C, comple... 11274 bp Transformation vector pC23C QL-ELE-00-017 75 bp View
EU315007.1 nt Transformation vector pC23C, comple... 11274 bp Transformation vector pC23C QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.