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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 182 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QL-ELE-00-022 69 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QL-ELE-00-024 87 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QL-ELE-00-026 60 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-001 79 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-001 79 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-004 82 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-004 82 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-004 82 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-001 195 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-004 123 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-005 195 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-012 82 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-012 82 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-014 60 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-017 75 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-022 69 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-024 87 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-026 60 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QT-ELE-00-001 79 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QT-ELE-00-004 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.