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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 266 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JX139719.1 emblreltgn Oryza sativa transgenic GM cassette... 985 bp Oryza sativa QL-CON-00-015 103 bp View
JX139719.1 nt Oryza sativa transgenic GM cassette... 985 bp Oryza sativa QL-CON-00-015 103 bp View
JX139724.1 nt Gossypium hirsutum transgenic strai... 428 bp Gossypium hirsutum QL-CON-00-015 136 bp View
JX139724.1 emblreltgn Gossypium hirsutum transgenic strai... 428 bp Gossypium hirsutum QL-CON-00-015 136 bp View
KF036176.1 emblreltgn Oryza sativa Indica Group transgeni... 2494 bp Oryza sativa Indica Group QL-CON-00-015 103 bp View
KF036176.1 nt Oryza sativa Indica Group transgeni... 2494 bp Oryza sativa Indica Group QL-CON-00-015 103 bp View
KF719008.1 nt Cloning vector pGGF002, complete se... 4314 bp Cloning vector pGGF002 QL-CON-00-015 104 bp View
LP789644.1 emblrelpat Sequence 4 from Patent WO2018054911. 16730 bp synthetic construct QL-CON-00-015 136 bp View
LQ672989.1 emblrelpat Sequence 1 from Patent WO2016164810. 28014 bp synthetic construct QL-CON-00-015 130 bp View
LQ672990.1 emblrelpat Sequence 2 from Patent WO2016164810. 28323 bp synthetic construct QL-CON-00-015 130 bp View
LQ912126.1 emblrelpat Sequence 2 from Patent WO2018172181. 6276 bp synthetic construct QL-CON-00-015 136 bp View
LQ969879.1 emblrelpat Sequence 5 from Patent WO2014198885. 15461 bp synthetic construct QL-CON-00-015 136 bp View
LQ986679.1 emblrelpat Sequence 35 from Patent EP2573183. 9192 bp synthetic construct QL-CON-00-015 102 bp View
LY486204.1 emblrelpat KR 1020170014024-A/4: Method for en... 10154 bp synthetic construct QL-CON-00-015 110 bp View
LY486656.1 emblrelpat KR 1020170017549-A/4: Method for en... 10154 bp synthetic construct QL-CON-00-015 110 bp View
LY705927.1 emblrelpat KR 1020190051045-A/4: TARGETED GENO... 16730 bp synthetic construct QL-CON-00-015 136 bp View
MI842167.1 emblrelpat Sequence 12 from patent US 10006044. 1778 bp unidentified QL-CON-00-015 102 bp View
MK791524.1 nt Binary cloning vector pRGEB32Bar-Ca... 15357 bp Binary cloning vector pRGEB32Bar-Cas9 QL-CON-00-015 132 bp View
MM703494.1 emblrelpat Sequence 10 from patent US 10202613. 3971 bp unidentified QL-CON-00-015 136 bp View
MM703495.1 emblrelpat Sequence 12 from patent US 10202613. 8491 bp unidentified QL-CON-00-015 136 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.