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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 266 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HL943847.1 emblrelpat Sequence 13 from patent US 9404119. 5606 bp unidentified QL-CON-00-015 136 bp View
HL943848.1 emblrelpat Sequence 14 from patent US 9404119. 6464 bp unidentified QL-CON-00-015 136 bp View
HQ233646.1 nt Gossypium hirsutum transgenic clone... 4644 bp Gossypium hirsutum QL-CON-00-015 136 bp View
HQ233646.1 emblreltgn Gossypium hirsutum transgenic clone... 4644 bp Gossypium hirsutum QL-CON-00-015 136 bp View
HV200032.1 emblrelpat JP 2000509612-A/1: Improved transfo... 2345 bp unidentified QL-CON-00-015 136 bp View
HV532523.1 emblrelpat JP 2011177191-A/5: Improved targete... 5345 bp synthetic construct QL-CON-00-015 149 bp View
I33114.1 emblrelpat Sequence 5 from patent US 5589610. 6376 bp unidentified QL-CON-00-015 136 bp View
I47737.1 emblrelpat Sequence 9 from patent US 5639948. 5620 bp unidentified QL-CON-00-015 136 bp View
I49888.1 emblrelpat Sequence 4 from patent US 5641664. 4883 bp unidentified QL-CON-00-015 136 bp View
I70383.1 emblrelpat Sequence 1 from patent US 5679558. 4883 bp unidentified QL-CON-00-015 136 bp View
I82376.1 emblrelpat Sequence 4 from patent US 5712135. 4883 bp unidentified QL-CON-00-015 136 bp View
JB074725.1 emblrelpat Sequence 1 from Patent WO2012168124. 12641 bp synthetic construct QL-CON-00-015 154 bp View
JB074726.1 emblrelpat Sequence 2 from Patent WO2012168124. 12188 bp synthetic construct QL-CON-00-015 154 bp View
JD017425.1 emblrelpat Sequence 2 from Patent WO2014161821. 11344 bp synthetic construct QL-CON-00-015 149 bp View
JD017426.1 emblrelpat Sequence 3 from Patent WO2014161821. 11343 bp synthetic construct QL-CON-00-015 149 bp View
JD017427.1 emblrelpat Sequence 4 from Patent WO2014161821. 11340 bp synthetic construct QL-CON-00-015 149 bp View
JD017428.1 emblrelpat Sequence 5 from Patent WO2014161821. 11328 bp synthetic construct QL-CON-00-015 149 bp View
JD017429.1 emblrelpat Sequence 6 from Patent WO2014161821. 11290 bp synthetic construct QL-CON-00-015 149 bp View
JD017430.1 emblrelpat Sequence 7 from Patent WO2014161821. 1671 bp synthetic construct QL-CON-00-015 136 bp View
JD017431.1 emblrelpat Sequence 8 from Patent WO2014161821. 4618 bp synthetic construct QL-CON-00-015 149 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.