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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 6349 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_AX765966 nrnl1 Sequence 52 from Patent WO02097097.... 5715 bp unidentified QL-ELE-00-002 215 bp View
NRN_AX765966 nrnl1 Sequence 52 from Patent WO02097097.... 5715 bp unidentified QL-ELE-00-003 173 bp View
NRN_AX765966 nrnl1 Sequence 52 from Patent WO02097097.... 5715 bp unidentified QL-ELE-00-008 94 bp View
NRN_AX840045 nrnl1 Sequence 114 from Patent WO03078629... 8482 bp unidentified QL-CON-00-014 163 bp View
NRN_AX840045 nrnl1 Sequence 114 from Patent WO03078629... 8482 bp unidentified QL-ELE-00-002 215 bp View
NRN_AX840045 nrnl1 Sequence 114 from Patent WO03078629... 8482 bp unidentified QL-ELE-00-003 173 bp View
NRN_AX840045 nrnl1 Sequence 114 from Patent WO03078629... 8482 bp unidentified QL-ELE-00-008 94 bp View
NRN_AX840635 nrnl1 Sequence 179 from Patent WO03077643. 10259 bp unidentified QL-CON-00-014 163 bp View
NRN_AX840635 nrnl1 Sequence 179 from Patent WO03077643. 10259 bp unidentified QL-ELE-00-002 215 bp View
NRN_AX840635 nrnl1 Sequence 179 from Patent WO03077643. 10259 bp unidentified QL-ELE-00-003 173 bp View
NRN_AX840635 nrnl1 Sequence 179 from Patent WO03077643. 10259 bp unidentified QL-ELE-00-008 94 bp View
NRN_AX954981 nrnl1 Sequence 17 from Patent WO03095655.... 8809 bp unidentified QL-CON-00-014 163 bp View
NRN_AX954981 nrnl1 Sequence 17 from Patent WO03095655.... 8809 bp unidentified QL-ELE-00-002 215 bp View
NRN_AX954981 nrnl1 Sequence 17 from Patent WO03095655.... 8809 bp unidentified QL-ELE-00-003 173 bp View
NRN_AX954981 nrnl1 Sequence 17 from Patent WO03095655.... 8809 bp unidentified QL-ELE-00-008 94 bp View
NRN_AX955000 nrnl1 Sequence 36 from Patent WO03095655.... 13718 bp unidentified QL-CON-00-014 165 bp View
NRN_AX955000 nrnl1 Sequence 36 from Patent WO03095655.... 13718 bp unidentified QL-ELE-00-002 215 bp View
NRN_AX955000 nrnl1 Sequence 36 from Patent WO03095655.... 13718 bp unidentified QL-ELE-00-003 173 bp View
NRN_AX955000 nrnl1 Sequence 36 from Patent WO03095655.... 13718 bp unidentified QL-ELE-00-008 94 bp View
NRN_BD287838 nrnl1 A new vector for plant gene trappin... 1771 bp unidentified QL-CON-00-014 163 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.