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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 6349 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KC200568.1 nt Binary vector pYBA-100, complete se... 5366 bp Binary vector pYBA-100 QL-ELE-00-003 173 bp View
KC200568.1 nt Binary vector pYBA-100, complete se... 5366 bp Binary vector pYBA-100 QL-ELE-00-008 94 bp View
KC478593.1 nt Gateway binary vector pGWB470, comp... 12177 bp Gateway binary vector pGWB470 QL-CON-00-014 163 bp View
KC478593.1 nt Gateway binary vector pGWB470, comp... 12177 bp Gateway binary vector pGWB470 QL-ELE-00-002 215 bp View
KC478593.1 nt Gateway binary vector pGWB470, comp... 12177 bp Gateway binary vector pGWB470 QL-ELE-00-003 173 bp View
KC478593.1 nt Gateway binary vector pGWB470, comp... 12177 bp Gateway binary vector pGWB470 QL-ELE-00-008 94 bp View
KF240818.1 nt Binary Vector pGCGi, complete sequence. 14214 bp Binary Vector pGCGi QL-CON-00-014 165 bp View
KF240818.1 nt Binary Vector pGCGi, complete sequence. 14214 bp Binary Vector pGCGi QL-ELE-00-002 215 bp View
KF240818.1 nt Binary Vector pGCGi, complete sequence. 14214 bp Binary Vector pGCGi QL-ELE-00-003 173 bp View
KF240818.1 nt Binary Vector pGCGi, complete sequence. 14214 bp Binary Vector pGCGi QL-ELE-00-008 94 bp View
KF661330.1 nt Binary vector pKGFP::P85-P87::GUS e... 16294 bp Binary vector pKGFP::P85-P87::GUS QL-CON-00-014 170 bp View
KF661330.1 nt Binary vector pKGFP::P85-P87::GUS e... 16294 bp Binary vector pKGFP::P85-P87::GUS QL-ELE-00-002 215 bp View
KF661330.1 nt Binary vector pKGFP::P85-P87::GUS e... 16294 bp Binary vector pKGFP::P85-P87::GUS QL-ELE-00-003 173 bp View
KF661330.1 nt Binary vector pKGFP::P85-P87::GUS e... 16294 bp Binary vector pKGFP::P85-P87::GUS QL-ELE-00-008 94 bp View
KF661330.1 nt Binary vector pKGFP::P85-P87::GUS e... 16294 bp Binary vector pKGFP::P85-P87::GUS QL-ELE-00-008 94 bp View
KF719012.1 nt Cloning vector pGGF007, complete se... 4024 bp Cloning vector pGGF007 QL-CON-00-014 140 bp View
KF719012.1 nt Cloning vector pGGF007, complete se... 4024 bp Cloning vector pGGF007 QL-ELE-00-002 215 bp View
KF719012.1 nt Cloning vector pGGF007, complete se... 4024 bp Cloning vector pGGF007 QL-ELE-00-003 173 bp View
KF719012.1 nt Cloning vector pGGF007, complete se... 4024 bp Cloning vector pGGF007 QL-ELE-00-008 94 bp View
KF876795.1 nt Binary vector pYBA-1131, complete s... 7651 bp Binary vector pYBA-1131 QL-CON-00-014 151 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.