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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 6349 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JQ974028.1 nt Plant transformation vector pAKE1::... 10699 bp Plant transformation vector pAKE1::35S BpMADS4 QL-ELE-00-002 215 bp View
JQ974028.1 nt Plant transformation vector pAKE1::... 10699 bp Plant transformation vector pAKE1::35S BpMADS4 QL-ELE-00-003 173 bp View
JQ974028.1 nt Plant transformation vector pAKE1::... 10699 bp Plant transformation vector pAKE1::35S BpMADS4 QL-ELE-00-008 94 bp View
JX996118.1 nt Binary plant gene expression vector... 17013 bp Binary plant gene expression vector pKM24-MD1 QL-CON-00-014 170 bp View
JX996118.1 nt Binary plant gene expression vector... 17013 bp Binary plant gene expression vector pKM24-MD1 QL-ELE-00-002 215 bp View
JX996118.1 nt Binary plant gene expression vector... 17013 bp Binary plant gene expression vector pKM24-MD1 QL-ELE-00-003 173 bp View
JX996118.1 nt Binary plant gene expression vector... 17013 bp Binary plant gene expression vector pKM24-MD1 QL-ELE-00-008 94 bp View
JX996118.1 nt Binary plant gene expression vector... 17013 bp Binary plant gene expression vector pKM24-MD1 QL-ELE-00-008 94 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QL-CON-00-014 170 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QL-ELE-00-002 215 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QL-ELE-00-003 173 bp View
KC176455.1 nt RNAi silencing vector pCAPD, comple... 16838 bp RNAi silencing vector pCAPD QL-ELE-00-008 94 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QL-CON-00-014 170 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QL-ELE-00-002 215 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QL-ELE-00-003 173 bp View
KC176456.1 nt RNAi silencing vector pCAPT, comple... 16040 bp RNAi silencing vector pCAPT QL-ELE-00-008 94 bp View
KC200568.1 nt Binary vector pYBA-100, complete se... 5366 bp Binary vector pYBA-100 QL-CON-00-014 151 bp View
KC200568.1 nt Binary vector pYBA-100, complete se... 5366 bp Binary vector pYBA-100 QL-ELE-00-002 215 bp View
KC200568.1 nt Binary vector pYBA-100, complete se... 5366 bp Binary vector pYBA-100 QL-ELE-00-002 215 bp View
KC200568.1 nt Binary vector pYBA-100, complete se... 5366 bp Binary vector pYBA-100 QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.