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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 6349 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JQ733909.1 nt Plant transformation vector pCAM-At... 11027 bp Plant transformation vector pCAM-AtSUC QL-ELE-00-002 215 bp View
JQ733909.1 nt Plant transformation vector pCAM-At... 11027 bp Plant transformation vector pCAM-AtSUC QL-ELE-00-003 173 bp View
JQ733909.1 nt Plant transformation vector pCAM-At... 11027 bp Plant transformation vector pCAM-AtSUC QL-ELE-00-008 94 bp View
JQ733910.1 nt Plant transformation vector pCAM-RS... 12001 bp Plant transformation vector pCAM-RSs1 QL-CON-00-014 157 bp View
JQ733910.1 nt Plant transformation vector pCAM-RS... 12001 bp Plant transformation vector pCAM-RSs1 QL-ELE-00-002 215 bp View
JQ733910.1 nt Plant transformation vector pCAM-RS... 12001 bp Plant transformation vector pCAM-RSs1 QL-ELE-00-003 173 bp View
JQ733910.1 nt Plant transformation vector pCAM-RS... 12001 bp Plant transformation vector pCAM-RSs1 QL-ELE-00-008 94 bp View
JQ733911.1 nt Plant transformation vector pCAM-ro... 10956 bp Plant transformation vector pCAM-rolC QL-CON-00-014 157 bp View
JQ733911.1 nt Plant transformation vector pCAM-ro... 10956 bp Plant transformation vector pCAM-rolC QL-ELE-00-002 215 bp View
JQ733911.1 nt Plant transformation vector pCAM-ro... 10956 bp Plant transformation vector pCAM-rolC QL-ELE-00-003 173 bp View
JQ733911.1 nt Plant transformation vector pCAM-ro... 10956 bp Plant transformation vector pCAM-rolC QL-ELE-00-008 94 bp View
JQ733912.1 nt Plant transformation vector pCAM-RT... 10868 bp Plant transformation vector pCAM-RTBV QL-CON-00-014 157 bp View
JQ733912.1 nt Plant transformation vector pCAM-RT... 10868 bp Plant transformation vector pCAM-RTBV QL-ELE-00-002 215 bp View
JQ733912.1 nt Plant transformation vector pCAM-RT... 10868 bp Plant transformation vector pCAM-RTBV QL-ELE-00-003 173 bp View
JQ733912.1 nt Plant transformation vector pCAM-RT... 10868 bp Plant transformation vector pCAM-RTBV QL-ELE-00-008 94 bp View
JQ965697.1 nt Bi-directional promoter binary vect... 13038 bp Bi-directional promoter binary vector p2CABA QL-CON-00-014 140 bp View
JQ965697.1 nt Bi-directional promoter binary vect... 13038 bp Bi-directional promoter binary vector p2CABA QL-ELE-00-002 215 bp View
JQ965697.1 nt Bi-directional promoter binary vect... 13038 bp Bi-directional promoter binary vector p2CABA QL-ELE-00-003 173 bp View
JQ965697.1 nt Bi-directional promoter binary vect... 13038 bp Bi-directional promoter binary vector p2CABA QL-ELE-00-008 94 bp View
JQ974028.1 nt Plant transformation vector pAKE1::... 10699 bp Plant transformation vector pAKE1::35S BpMADS4 QL-CON-00-014 151 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.